CK933014

Overview
NameCK933014
Unique NameCK933014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 73/137 (53.28%), Postives = 98/137 (71.53%), Query Frame = 3
Query:   96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 500
            G+ A +KLK +R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLI+NGK++ AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L  +   K EKP
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 75/138 (54.35%), Postives = 93/138 (67.39%), Query Frame = 3
Query:   96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            G  A RKLK      RW D  Y +  LG + K  P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF   DG +N+I+E+DEV I G  GR G + GDIPGVRF V KV+ VSL  +   +KEKPR
Sbjct:    4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 72/138 (52.17%), Postives = 103/138 (74.64%), Query Frame = 3
Query:   96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            G+ A RKL+  R + RW+ + ++   L  + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL++N K + AFVP DG + Y++E+DEV+I G  G +G ++GDIPGVR++VV V+GVSL AL++ KK+KPR
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = 3
Query:   96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            G  A  +L+  R+  RW D  Y +  LG + K  P +G+   +GIVLEK+G+EAKQPNSAIRKC R+QLI+NG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  +   +KEKPR
Sbjct:    4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 3
Query:   96 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 500
            G  A RKLK  R+  RW+D  Y +   G  E      G+   +GIVLEK+GIEAKQPNSAIRKC RVQLI+NG+++ AF P DG +++I+E+DEV IAG  G KG A+GD+  V +KV KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 75/139 (53.96%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            +G  A RKLK    R RW+D  + ++  G + K  P  G+   +GIVLEKIG+EAKQPNSAIRKC RVQLI+NG++++AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V KV+ V L  L   +KEKPR
Sbjct:    3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 72/139 (51.80%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            +G  A RKL    ++ RW+DK+Y +  L  + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVR+ V  V+ V L  +   +KEKPR
Sbjct:    3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 74/139 (53.24%), Postives = 94/139 (67.63%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLI+NG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 72/139 (51.80%), Postives = 94/139 (67.63%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            +G  A   LK  R+  RW D SY +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLI+NG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRF+V  V+ VSL  +   + EKPR
Sbjct:    3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141          
The following BLAST results are available for this feature:
BLAST of CK933014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METS37.042e-3453.2830S ribosomal protein S12P OS=Methanobrevibacter s... [more]
RS12_METMJ7.042e-3454.3530S ribosomal protein S12P OS=Methanoculleus maris... [more]
RS12_AERPE7.042e-3452.1730S ribosomal protein S12P OS=Aeropyrum pernix GN=... [more]
RS12_METBU1.201e-3352.1730S ribosomal protein S12P OS=Methanococcoides bur... [more]
RS12_HALMO2.049e-3353.2830S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_METHJ5.961e-3353.9630S ribosomal protein S12P OS=Methanospirillum hun... [more]
RS12_METB67.785e-3351.8030S ribosomal protein S12P OS=Methanoregula boonei... [more]
RS12_METAC7.785e-3353.2430S ribosomal protein S12P OS=Methanosarcina aceti... [more]
RS12_METMA1.328e-3252.5230S ribosomal protein S12P OS=Methanosarcina mazei... [more]
RS12_METBF1.328e-3251.8030S ribosomal protein S12P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933014 ID=CK933014; Name=CK933014; organism=Citrus sinensis; type=EST; length=699bp
GGGGACTCGCGGCGTCCTCTTGCAACTCTCAAGCTCCAAAGTCGTTCGTT
ACAGTCAAAAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAT
GGGAGCGGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGGGCTG
ATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTT
GCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCGA
GGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGA
TCGAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTTG
AACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAAA
GGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAGG
TTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACCA
AGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTAG
CACTTTATTTTCGTTAATCCCCGTTGATTACTGTTTTCCTTTATCATGTA
CTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTATTAG
TAAATTAGTATCTGTCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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