CK933014
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34 Identity = 73/137 (53.28%), Postives = 98/137 (71.53%), Query Frame = 3 Query: 96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 500 G+ A +KLK +R+ +W D YK+ L + K P G+ A+GIV+EK+GIEAKQPNSAIRKC RVQLI+NGK++ AF P DG + +I+E+DEV+I G G G ++GDIPGVR+KV KV+ V+L + K EKP Sbjct: 3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34 Identity = 75/138 (54.35%), Postives = 93/138 (67.39%), Query Frame = 3 Query: 96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 G A RKLK RW D Y + LG + K P G+ +GIVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF DG +N+I+E+DEV I G GR G + GDIPGVRF V KV+ VSL + +KEKPR Sbjct: 4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34 Identity = 72/138 (52.17%), Postives = 103/138 (74.64%), Query Frame = 3 Query: 96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 G+ A RKL+ R + RW+ + ++ L + K P G+ A+GIVLEK+G+EA+QPNSA+RKC RVQL++N K + AFVP DG + Y++E+DEV+I G G +G ++GDIPGVR++VV V+GVSL AL++ KK+KPR Sbjct: 9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33 Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = 3 Query: 96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 G A +L+ R+ RW D Y + LG + K P +G+ +GIVLEK+G+EAKQPNSAIRKC R+QLI+NG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL + +KEKPR Sbjct: 4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33 Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 3 Query: 96 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 500 G A RKLK R+ RW+D Y + G E G+ +GIVLEK+GIEAKQPNSAIRKC RVQLI+NG+++ AF P DG +++I+E+DEV IAG G KG A+GD+ V +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33 Identity = 75/139 (53.96%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 +G A RKLK R RW+D + ++ G + K P G+ +GIVLEKIG+EAKQPNSAIRKC RVQLI+NG++++AF DG +N+I+E+DEV I G GR G ++GDIPGVRF V KV+ V L L +KEKPR Sbjct: 3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33 Identity = 72/139 (51.80%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 +G A RKL ++ RW+DK+Y + L + K P G+ A+GIVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF DG +N+I+E+DEV I G GR G ++GDIPGVR+ V V+ V L + +KEKPR Sbjct: 3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33 Identity = 74/139 (53.24%), Postives = 94/139 (67.63%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32 Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC R+QLI+NG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32 Identity = 72/139 (51.80%), Postives = 94/139 (67.63%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 +G A LK R+ RW D SY + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC R+QLI+NG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRF+V V+ VSL + + EKPR Sbjct: 3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141 The following BLAST results are available for this feature:
BLAST of CK933014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933014 ID=CK933014; Name=CK933014; organism=Citrus sinensis; type=EST; length=699bpback to top |