CK933014

Overview
NameCK933014
Unique NameCK933014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:18..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497
            +G  AGRKL   RR  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 70/139 (50.36%), Postives = 92/139 (66.19%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            +G  A R L    ++ RW+D  Y +  L  + K  P  G+   + IVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V  V+GVSL  L   + EK R
Sbjct:    3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSLNELVIGRAEKAR 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 69/138 (50.00%), Postives = 95/138 (68.84%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497
            RG  AGRKL+  R+  RW D +Y +  L  + K  P  G+  A+GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+ + AF P +  +N+I+E+DEV+I G G  +   A GDIPGV++KV+ V   SL  L + ++EK
Sbjct:    8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497
            +G  AGRKL   R+  RW    Y    LG + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLI+NG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KV+ V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 67/139 (48.20%), Postives = 90/139 (64.75%), Query Frame = 3
Query:   93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            +G  AGRK+   R+  RW    Y    L   E   P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLI+NG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVRF+VV V   S+  L + ++EK R
Sbjct:    8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 70/138 (50.72%), Postives = 88/138 (63.77%), Query Frame = 3
Query:   96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            G+ AGRKLK  R++ RW D  Y +  L  + K  P  G+  A GIVLEK  +E +QPNS   K  RVQL +NGK + AF P DG +  I+E+DEVLI G  GR+G ++GDIPGVR+KV  V+G  L  L K K EK R
Sbjct:    5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142          
The following BLAST results are available for this feature:
BLAST of CK933014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METM71.795e-2950.3630S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METLZ1.795e-2950.3630S ribosomal protein S12P OS=Methanocorpusculum l... [more]
RS12_METMP3.998e-2949.6430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METM53.998e-2949.6430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METJA3.998e-2950.0030S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_METVS6.820e-2948.9130S ribosomal protein S12P OS=Methanococcus vannie... [more]
RS12_META31.163e-2848.2030S ribosomal protein S12P OS=Methanococcus aeolic... [more]
RS12_NANEQ3.742e-2750.7230S ribosomal protein S12P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933014 ID=CK933014; Name=CK933014; organism=Citrus sinensis; type=EST; length=699bp
GGGGACTCGCGGCGTCCTCTTGCAACTCTCAAGCTCCAAAGTCGTTCGTT
ACAGTCAAAAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAT
GGGAGCGGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGGGCTG
ATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTT
GCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCGA
GGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGA
TCGAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTTG
AACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAAA
GGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAGG
TTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACCA
AGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTAG
CACTTTATTTTCGTTAATCCCCGTTGATTACTGTTTTCCTTTATCATGTA
CTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTATTAG
TAAATTAGTATCTGTCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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