CK933014
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29 Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497 +G AGRKL RR RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29 Identity = 70/139 (50.36%), Postives = 92/139 (66.19%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 +G A R L ++ RW+D Y + L + K P G+ + IVLEK+G+EAKQPNSAIRKC RVQLI+NG+++ AF DG +N+I+E+DEV I G GR G ++GDIPGVRF V V+GVSL L + EK R Sbjct: 3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSLNELVIGRAEKAR 141
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29 Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497 +G AGRKL R+ RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29 Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497 +G AGRKL R+ RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29 Identity = 69/138 (50.00%), Postives = 95/138 (68.84%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497 RG AGRKL+ R+ RW D +Y + L + K P G+ A+GIV+EK+G+EAKQPNSAIRKC RVQLI+NG+ + AF P + +N+I+E+DEV+I G G + A GDIPGV++KV+ V SL L + ++EK Sbjct: 8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29 Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497 +G AGRKL R+ RW Y LG + K P G+ +GIV+EK+G+EAKQPNSAIRKC +VQLI+NG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVR+KV+ V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28 Identity = 67/139 (48.20%), Postives = 90/139 (64.75%), Query Frame = 3 Query: 93 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 +G AGRK+ R+ RW Y L E P G+ +GIV+EK+G+EAKQPNSAIRKC +VQLI+NG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVRF+VV V S+ L + ++EK R Sbjct: 8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27 Identity = 70/138 (50.72%), Postives = 88/138 (63.77%), Query Frame = 3 Query: 96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503 G+ AGRKLK R++ RW D Y + L + K P G+ A GIVLEK +E +QPNS K RVQL +NGK + AF P DG + I+E+DEVLI G GR+G ++GDIPGVR+KV V+G L L K K EK R Sbjct: 5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142 The following BLAST results are available for this feature:
BLAST of CK933014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933014 ID=CK933014; Name=CK933014; organism=Citrus sinensis; type=EST; length=699bpback to top |