CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA6 (Histidine ammonia-lyase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hutH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 50/156 (32.05%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT+  +  +      + L+  + E + ++   V + + +G   YG+ TGFG  ++ + +      LQ+ ++    AGI   GT  S     ST R  ML+++N+L +GYSGIR  ++EA+  L NH + P +P +G++ ASGDL PL++++  L G
Sbjct:   12 LTIETMRQVHRRHVPITLAPDSFERIHSAEQTVRDVITQGRTVYGINTGFGLLANTKIEVDELELLQRSIVLSHAAGI---GTLMSA----STVRLLMLLKINSLARGYSGIRLIVIEALIALYNHQVYPAIPEKGSVGASGDLAPLAHMSAVLLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURVG (Histidine ammonia-lyase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hutH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 49/156 (31.41%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT+ Q+  IA  S  ++L  ++   + A +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +  S+ R  M +++++L +G+SGIR E+++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    9 LTLPQLRRIARESVQLQLDPASFAKIDAGAKAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARSSVRLLMALKLSSLGRGHSGIRREVMDALITLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP3 (Histidine ammonia-lyase OS=Klebsiella pneumoniae (strain 342) GN=hutH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 48/156 (30.77%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L+++Q+  + +   N+ L  SA   +  S   V   + +G  +YG+ TGFG  +  R  T +   LQ+ L+    AG+          L     R  M++++N+L +G+SGIR  +++A+  L+N  +TP +P +G++ ASGDL PL++++  L G
Sbjct:   11 LSLSQLREVYSHPLNITLDSSAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTDDLENLQRSLVLSHAAGV-------GEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_GEOTN (Histidine ammonia-lyase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=hutH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 54/162 (33.33%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L G +LT+A+   +      V  +  + E V  S   V +++  G   YGV TGFG  +  R  +G  L++  I  L +     G            RA +L+R N LL+GYSGIR  ++E +   LN  I P +P +G++ ASGDL PL+++A  L G
Sbjct:    1 MIVLTGHSLTIAEARRVIYDREPVAAALESMEAVRKSRAAVEQAIASGRTIYGVNTGFGKLADVRI-DGSDLEQLQINLLRSHACAVG----EPFAEEVVRAMLLLRANALLKGYSGIRPVVIERLLAFLNSGIHPIVPQQGSLGASGDLAPLAHLALALVG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_DICDI (Probable histidine ammonia-lyase OS=Dictyostelium discoideum GN=hal PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 55/164 (33.54%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +V L G TL +  +  I     NV +++   E +    N + + +      YG+ TGFG  S           LQ  LIR  ++G+   GT     L    TR  + +R+N L +GYSGI  E ++   K+LN N  P +P +GT+ ASGDL PLS++A  + G
Sbjct:    7 IVYLNGNTLKIEDLINIGYRGYNVSITQEVEELIQKGRNVIDDILKSEKTVYGINTGFGLFSDVIIPPDQVKMLQVNLIRSHSSGV---GTP----LTPERTRMLLALRINVLTKGYSGITLETVKRAIKILNGNCLPLVPEKGTVGASGDLAPLSHLALGMMG 163          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURCJ (Histidine ammonia-lyase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hutH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 49/156 (31.41%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT+ Q+  IA  S  ++L  ++   + A +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +  S+ R  M +++++L +G+SGIR E+++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    9 LTLPQLRQIARESVQLKLDPASFAKIDAGAKAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARSSVRLLMALKLSSLGRGHSGIRREVMDALITLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_VIBFM (Histidine ammonia-lyase OS=Vibrio fischeri (strain MJ11) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-15
Identity = 46/156 (29.49%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L++ Q+  ++   T + L  +A   +  S++ V + + +    YG+ TGFG  ++ R   K+   LQ+ ++    AGI          +  +T R  +++++N+L +GYSGIR  +++A+ +L+N  + PC+P +G++ ASGDL PL++++  L G
Sbjct:   11 LSLKQLREVSRHPTKLSLDPNALPDMLISADVVAQVIKEDKTVYGINTGFGLLANTRIAEKDLETLQRSIVLSHAAGI-------GEFMDDATVRLMIILKINSLSRGYSGIRPLVIDALIQLVNSEVYPCIPKKGSVGASGDLAPLAHMSTVLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STAS1 (Histidine ammonia-lyase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-15
Identity = 53/163 (32.52%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNG--GALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            + L GE LT+  +         VE+++ A E V  S   V   +      YG+TTGFG  S  R        LQ  LIR    G+                   M++R+NTLL+G+SG    ++E +   +N+ I P +P +G++ ASGDL PLS++A  L G
Sbjct:    3 LQLNGEMLTINDIKTFLNKEDTVEVTQEALERVKKSRQTVEHIIENKETIYGITTGFGLFSDVRIDKDEYNQLQVNLIRSHACGV-------GKPFSEEVALVMMVLRLNTLLKGHSGTTVALVEQLVYYINNRIVPVIPQQGSLGASGDLAPLSHLALALIG 158          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP7 (Histidine ammonia-lyase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-15
Identity = 48/156 (30.77%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L+++Q+  I +   N+ L   A   +  S   V   + +G  +YG+ TGFG  +  R  T++   LQ+ L+    AG+          L     R  M++++N+L +G+SGIR  +++A+  L+N  +TP +P +G++ ASGDL PL++++  L G
Sbjct:   11 LSLSQLRDIYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGV-------GEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_IDILO (Histidine ammonia-lyase OS=Idiomarina loihiensis GN=hutH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-15
Identity = 41/139 (29.50%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  400 VELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++LS+ A++ +  S+  V + + +G   YG+ TGFG  ++ R        + L       +  +   +   +  S  R  +L+++N+L +G+SG+R  +++A+ KLLN  + PC+P +G++ ASGDL PL+++   L G
Sbjct:   26 LKLSDEAKDNIATSAKTVADVLEQGRVVYGINTGFGLLANTRIP-----PERLTDLQRRIVLSHAAGTGDLMEDSVVRLMLLLKINSLSRGFSGVRQVLVDALIKLLNAEVYPCIPEKGSVGASGDLAPLAHMVLPLVG 159          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_PSEA66.633e-1632.05Histidine ammonia-lyase OS=Pseudoalteromonas atlan... [more]
HUTH_BURVG6.633e-1631.41Histidine ammonia-lyase OS=Burkholderia vietnamien... [more]
HUTH_KLEP38.663e-1630.77Histidine ammonia-lyase OS=Klebsiella pneumoniae (... [more]
HUTH_GEOTN8.663e-1633.33Histidine ammonia-lyase OS=Geobacillus thermodenit... [more]
HUTH_DICDI8.663e-1633.54Probable histidine ammonia-lyase OS=Dictyostelium ... [more]
HUTH_BURCJ8.663e-1631.41Histidine ammonia-lyase OS=Burkholderia cepacia (s... [more]
HUTH_VIBFM1.131e-1529.49Histidine ammonia-lyase OS=Vibrio fischeri (strain... [more]
HUTH_STAS11.131e-1532.52Histidine ammonia-lyase OS=Staphylococcus saprophy... [more]
HUTH_KLEP71.131e-1530.77Histidine ammonia-lyase OS=Klebsiella pneumoniae s... [more]
HUTH_IDILO1.131e-1529.50Histidine ammonia-lyase OS=Idiomarina loihiensis G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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