CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURPS (Histidine ammonia-lyase OS=Burkholderia pseudomallei GN=hutH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L    LT+ Q+  IA  +  + L  ++   +   +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +     R  M +++++L +G+SGIR  +++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    1 MITLTPGRLTLPQLRRIARENVQIALDPASFAAIDRGAQAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARPVVRLLMALKLSSLGRGHSGIRRVVMDALVTLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURP6 (Histidine ammonia-lyase OS=Burkholderia pseudomallei (strain 668) GN=hutH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L    LT+ Q+  IA  +  + L  ++   +   +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +     R  M +++++L +G+SGIR  +++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    1 MITLTPGRLTLPQLRRIARENVQIALDPASFAAIDRGAQAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARPVVRLLMALKLSSLGRGHSGIRRVVMDALVALFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURP0 (Histidine ammonia-lyase OS=Burkholderia pseudomallei (strain 1106a) GN=hutH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L    LT+ Q+  IA  +  + L  ++   +   +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +     R  M +++++L +G+SGIR  +++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    1 MITLTPGRLTLPQLRRIARENVQIALDPASFAAIDRGAQAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARPVVRLLMALKLSSLGRGHSGIRRVVMDALVTLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURMA (Histidine ammonia-lyase OS=Burkholderia mallei GN=hutH PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L    LT+ Q+  IA  +  + L  ++   +   +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +     R  M +++++L +G+SGIR  +++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    1 MITLTPGRLTLPQLRRIARENVQIALDPASFAAIDRGAQAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARPVVRLLMALKLSSLGRGHSGIRRVVMDALVTLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURM9 (Histidine ammonia-lyase OS=Burkholderia mallei (strain NCTC 10229) GN=hutH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L    LT+ Q+  IA  +  + L  ++   +   +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +     R  M +++++L +G+SGIR  +++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    1 MITLTPGRLTLPQLRRIARENVQIALDPASFAAIDRGAQAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARPVVRLLMALKLSSLGRGHSGIRRVVMDALVTLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURM7 (Histidine ammonia-lyase OS=Burkholderia mallei (strain NCTC 10247) GN=hutH PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L    LT+ Q+  IA  +  + L  ++   +   +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +     R  M +++++L +G+SGIR  +++A+  L N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    1 MITLTPGRLTLPQLRRIARENVQIALDPASFAAIDRGAQAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARPVVRLLMALKLSSLGRGHSGIRRVVMDALVTLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_RAT (Histidine ammonia-lyase OS=Rattus norvegicus GN=Hal PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 53/174 (30.46%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  307 MVAEYRKP--VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLV--RVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            + ++YR+P   + L G++L+   +  +      ++L+  A + V  S   +   + + T  YG+TTGFG  + R       LQ+  +  + +   G G       P S  R  ML+  R+N L +GYSGI  E L+ + ++ N +    +P +GT+ ASGDL PLS++A  L G
Sbjct:  103 LYSKYREPEKYIALDGDSLSTEDLVNLGKGHYKIKLTSIAEKKVQQSREVIDSIIKERTVVYGITTGFGKFA-RTVIPANKLQELQVNLVRSHSSGVGK------PLSPERCRMLLALRINVLAKGYSGISLETLKQVIEVFNASCLSYVPEKGTVGASGDLAPLSHLALGLIG 269          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PHOLL (Histidine ammonia-lyase OS=Photorhabdus luminescens subsp. laumondii GN=hutH PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 46/156 (29.49%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT+ ++  +      + L       +  S   V   + +   +YG+ TGFG  +  R +  N   LQ+ L+    AG+          L  + TR  M++++N+L +GYSGIR  +++A+  L+N  I P +P +G++ ASGDL PL++++  L G
Sbjct:   11 LTLDELRQVYLQPVKITLDSQIFPAIERSVECVNAILAENRTAYGINTGFGLLASTRIEEDNLEKLQRSLVVSHAAGV-------GKALDDNMTRLIMVLKINSLSRGYSGIRLAVIQALIALVNAEIYPHIPCKGSVGASGDLAPLAHMSLLLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PARDP (Histidine ammonia-lyase OS=Paracoccus denitrificans (strain Pd 1222) GN=hutH PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ + GET T+AQ+  +      V L++SAR G+  S+  +  + N     YGV TGFG  A+     ++   LQ+ LI     G+          +   T R  M++++ +L +G SG+R E+++ I  +L   + P +P +G++ ASGDL PL+++A  + G
Sbjct:    4 LILIPGET-TLAQLEQVWRQGLAVRLADSARPGIAESAARIAAAANGEAPVYGVNTGFGKLASIKIAARDTATLQRNLILSHCCGV-------GEPVEPETVRLIMVLKLLSLGRGASGVRPEVIQLIEDMLARGVLPVIPSQGSVGASGDLAPLAHMAAAMLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ACIBL (Histidine ammonia-lyase OS=Acidobacteria bacterium (strain Ellin345) GN=hutH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++L G TLT+ +V  +      V L   AR  V  +   + + +     +Y VTTG G  S  R        LQ  L+R    G+          L    +RA ML+R N+L +G+SG+R  +++ + ++LN  + P +P +G++ ASGDL PL++    L G
Sbjct:    4 LHLTGNTLTLDEVREVVYEQRPVLLDSDARAAVDRARAVIEDVVANDRLAYAVTTGVGKLSDVRIPPAENRTLQLNLMRSHAVGV-------GDPLSEQVSRAMMLLRANSLCKGWSGVRGLVIDTLCEMLNRGVHPVIPSQGSVGASGDLAPLAHQGLVLIG 159          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_BURPS8.108e-1428.05Histidine ammonia-lyase OS=Burkholderia pseudomall... [more]
HUTH_BURP68.108e-1428.05Histidine ammonia-lyase OS=Burkholderia pseudomall... [more]
HUTH_BURP08.108e-1428.05Histidine ammonia-lyase OS=Burkholderia pseudomall... [more]
HUTH_BURMA8.108e-1428.05Histidine ammonia-lyase OS=Burkholderia mallei GN=... [more]
HUTH_BURM98.108e-1428.05Histidine ammonia-lyase OS=Burkholderia mallei (st... [more]
HUTH_BURM78.108e-1428.05Histidine ammonia-lyase OS=Burkholderia mallei (st... [more]
HUTH_RAT1.059e-1330.46Histidine ammonia-lyase OS=Rattus norvegicus GN=Ha... [more]
HUTH_PHOLL1.059e-1329.49Histidine ammonia-lyase OS=Photorhabdus luminescen... [more]
HUTH_PARDP1.059e-1330.49Histidine ammonia-lyase OS=Paracoccus denitrifican... [more]
HUTH_ACIBL1.383e-1330.67Histidine ammonia-lyase OS=Acidobacteria bacterium... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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