CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_MOUSE (Histidine ammonia-lyase OS=Mus musculus GN=Hal PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 53/174 (30.46%), Postives = 88/174 (50.57%), Query Frame = 1
Query:  307 MVAEYRKP--VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLV--RVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            + ++YR+P   + L G++L+   +  +      ++L+  A + V  S   +   + + T  YG+TTGFG  + R       LQ+  +  + +   G G       P S  R  ML+  R+N L +GYSGI  E L+ + +  N +    +P +GT+ ASGDL PLS++A  L G
Sbjct:  103 LYSKYREPEKYIALDGDSLSTEDLVNLGKGRYKIKLTSIAEKKVQQSREVIDSIIKERTVVYGITTGFGKFA-RTVIPANKLQELQVNLVRSHSSGVGK------PLSPERCRMLLALRINVLAKGYSGISLETLKQVIEAFNASCLSYVPEKGTVGASGDLAPLSHLALGLIG 269          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_GLUOX (Histidine ammonia-lyase OS=Gluconobacter oxydans GN=hutH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +T++ +        +V L +   E +  ++  V   + +G   YGV TGFG  +  R  +     LQ+ L+    AGI          +P    R  +L++ N L +GYSG+R +I++ +  +LN  + P +P +G++ ASGDL PL++++  + G
Sbjct:   13 ITLSDLRDFYFGQMDVRLDDGTFEALQRAAESVERIVGRGEPVYGVNTGFGKLAKTRIPDDRLRDLQRNLVLSHAAGI-------GQPMPERVVRLILLLKANGLARGYSGVRPQIVQLLLDMLNQGVVPVIPEKGSVGASGDLAPLAHMSAVVIG 161          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BACHD (Histidine ammonia-lyase OS=Bacillus halodurans GN=hutH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 52/161 (32.30%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  340 LGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L G +L++  +  I      V  S+ + E V  S   V + +      YG+TTGFG  S           LQ  LI     G+           P + +R  +++R N LL+G+SG+R  ++E +  L+N NI P +P +G++ ASGDL PLS++A  L G
Sbjct:    7 LDGRSLSLHDLHRIIYEGETVGASDESMEKVKQSRKAVEQIVADEKIIYGITTGFGKFSDIFIDPDDVENLQHNLIYSHACGV-------GSPFPETVSRTMLVLRANALLKGFSGVRPLVIERLLALVNANIHPVIPQQGSLGASGDLAPLSHLALVLLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_RHOS1 (Histidine ammonia-lyase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  358 TVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            T+AQ+ AI        L+  AR  V A++  V E+       YGV TGFG  +  +    +   LQ+ LI     G+          +P ST R  M +++ +L +G SG+R+EI+  +  +L   +TP +P +G++ ASGDL PL+++A  + G
Sbjct:   10 TLAQLEAIWREGRPARLAPEARPAVEAAAARVAEAAAGTAPVYGVNTGFGKLASLKIAPADTAQLQRNLILSHCCGV-------GEPMPPSTARLMMALKLLSLGRGASGVRWEIVALLEGMLAAGVTPVIPAQGSVGASGDLAPLAHMAAVMIG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ACICJ (Histidine ammonia-lyase OS=Acidiphilium cryptum (strain JF-5) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  406 LSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNG--GALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L    R  V A++  V   + +    YG+ TGFG  +  R +      LQ+ L+    AG+          LP    R  + +++ +L +G SG+R+E +EA+  LL+H+I P +P +G++ ASGDL PL+++   L G
Sbjct:   24 LDAGCRAAVEAAAGCVAAILERDEAVYGINTGFGRLASTRIEPADLATLQRNLVLSHAAGV-------GEALPAPIVRMVIALKLASLARGASGVRWETIEALQGLLDHDILPVIPAQGSVGASGDLAPLAHMTCALLG 155          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ACIAC (Histidine ammonia-lyase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 48/165 (29.09%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  328 PVVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNG--GALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            P + L    +T+A++ AIA     + L  SA  G+ AS   V     +    YG+ TGFG  +  +  +     LQ+ L+   + G       +   LP    R  +  +  +L +G+SG+R  +++A+  L N ++ P +P +G++ ASGDL PL+++A  L G
Sbjct:    5 PTLVLHPGRVTLAELRAIAAGGQRLALDASALAGMRASQATVDRIALEEQVVYGINTGFGKLASTKIAHDRLAELQRNLVLSHSVG-------TGDPLPDGVVRMVLATKAVSLARGHSGVRPALVDALLALANADVLPVIPAKGSVGASGDLAPLAHLACVLIG 162          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ROSDO (Histidine ammonia-lyase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  358 TVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            T+AQ+  I  ++  V L  SA  G+ A+   V ++       YGV TGFG  A+     K+   LQ+ LI     G+          L  +TTR  M++++ +L +G SG+    LE I  +L   +TP +P +G++ ASGDL PL+++A  + G
Sbjct:   11 TLAQLQDIWANNRAVTLCPSAHAGIKAAQALVAKAAAGDDAVYGVNTGFGKLASVKIAAKDVATLQRNLILSHCCGV-------GEPLDAATTRLMMVLKLLSLGRGASGVAMTTLEIIENMLARGVTPVIPSQGSVGASGDLAPLAHMAAAMIG 158          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_RHOS4 (Histidine ammonia-lyase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  358 TVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            T+AQ+ AI        L+  AR  V A++  V E+       YGV TGFG  +  +    +   LQ+ LI     G+          +P ST R  + +++ +L +G SG+R+EI+  +  +L   +TP +P +G++ ASGDL PL+++A  + G
Sbjct:   10 TLAQLEAIWREGRRARLAPEARPAVEAAAARVAEAAAGTAPVYGVNTGFGKLASLKIAPADTAQLQRNLILSHCCGV-------GEPMPPSTARLMIALKLLSLGRGASGVRWEIVALLEGMLAAGVTPVIPAQGSVGASGDLAPLAHMAAVMIG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ALKMQ (Histidine ammonia-lyase OS=Alkaliphilus metalliredigens (strain QYMF) GN=hutH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 45/162 (27.78%), Postives = 77/162 (47.53%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG-IFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V++ G  LT+ ++  +A    ++ +   A   V  +   V   + +    YG+TTGFG  S        A+ K+    L    I  +       L     R  +L+R N L +GYSG+R   LE +  +LN  + P +P +G++ +SGDL PL+++   + G
Sbjct:    4 VSINGNDLTLEEMIMVAREYCSITIEPEAMVRVANTRKVVERYVEEERVVYGITTGFGKFSDV------AISKDQTEMLQRNLIISHACGVGEPLKEEVVRGVLLLRANALAKGYSGVRPNTLETLINMLNKGVHPIIPEKGSLGSSGDLAPLAHMVLVMMG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_RHILO (Histidine ammonia-lyase OS=Rhizobium loti GN=hutH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 43/140 (30.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  403 ELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +L E+ R  + AS+  V   + KG   YG+ TGFG  +  R   G    LQ+ ++    AG+          +P +  R  M +++ +L QG SG+R E ++ +  +L +++ P +P +G++ ASGDL PLS++   + G
Sbjct:   26 KLDEACRPKIKASAEAVARIVAKGEPVYGINTGFGKLASVRIPAGDLETLQRNIVLSHAAGV-------GEPMPVAIARLMMALKLASLAQGASGVRPETIDLLQAMLANDVIPVVPAQGSVGASGDLAPLSHMTAVMIG 158          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_MOUSE1.806e-1330.46Histidine ammonia-lyase OS=Mus musculus GN=Hal PE=... [more]
HUTH_GLUOX1.806e-1328.21Histidine ammonia-lyase OS=Gluconobacter oxydans G... [more]
HUTH_BACHD2.359e-1332.30Histidine ammonia-lyase OS=Bacillus halodurans GN=... [more]
HUTH_RHOS13.081e-1332.26Histidine ammonia-lyase OS=Rhodobacter sphaeroides... [more]
HUTH_ACICJ4.024e-1331.65Histidine ammonia-lyase OS=Acidiphilium cryptum (s... [more]
HUTH_ACIAC4.024e-1329.09Histidine ammonia-lyase OS=Acidovorax avenae subsp... [more]
HUTH_ROSDO5.255e-1332.90Histidine ammonia-lyase OS=Roseobacter denitrifica... [more]
HUTH_RHOS45.255e-1331.61Histidine ammonia-lyase OS=Rhodobacter sphaeroides... [more]
HUTH_ALKMQ8.964e-1327.78Histidine ammonia-lyase OS=Alkaliphilus metallired... [more]
HUTH_RHILO1.529e-1230.71Histidine ammonia-lyase OS=Rhizobium loti GN=hutH ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
back to top