CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_RHOSK (Histidine ammonia-lyase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=hutH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  358 TVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTK--NGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            T+AQ+ AI        L+  AR  V A++  V  +       YGV TGFG  +  +    +   LQ+ LI     G+          +P ST R  M +++ +L +G SG+R++I+  +  +L   +TP +P +G++ ASGDL PL+++A  + G
Sbjct:   10 TLAQLEAIWREGRRARLAPEARPAVEAAAARVAAAAAGTAPVYGVNTGFGKLASLKIAPADTAQLQRNLILSHCCGV-------GEPMPPSTARLMMALKLLSLGRGASGVRWKIVALLEGMLAAGVTPVIPAQGSVGASGDLAPLAHMAAVMIG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_XANCP (Histidine ammonia-lyase OS=Xanthomonas campestris pv. campestris GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 50/156 (32.05%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +T+AQ  A+   +  V L  +  + V  S+  V   + +G   YGV TGFG  +  R +      LQ+ ++    AG+ G+ T      P    R  M +++ +L QG SGI+ + L  +  +L   ITP +P +G++ ASGDL PLS++A  + G
Sbjct:   12 VTLAQWRALYRGA-EVTLDPACAQAVLRSAQTVEAIVARGEPVYGVNTGFGKLASVRIERDDLQTLQRNIVLSHAAGV-GDPT------PVPVVRLMMALKLTSLAQGASGIQPDTLALLEAMLRQGITPVVPCQGSVGASGDLAPLSHLAAVMIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_XANCB (Histidine ammonia-lyase OS=Xanthomonas campestris pv. campestris (strain B100) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 50/156 (32.05%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +T+AQ  A+   +  V L  +  + V  S+  V   + +G   YGV TGFG  +  R +      LQ+ ++    AG+ G+ T      P    R  M +++ +L QG SGI+ + L  +  +L   ITP +P +G++ ASGDL PLS++A  + G
Sbjct:   12 VTLAQWRALYRGA-EVTLDPACAQAVLRSAQTVEAIVARGEPVYGVNTGFGKLASVRIERDDLQTLQRNIVLSHAAGV-GDPT------PVPVVRLMMALKLTSLAQGASGIQPDTLALLEAMLRQGITPVVPCQGSVGASGDLAPLSHLAAVMIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_XANC8 (Histidine ammonia-lyase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 50/156 (32.05%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +T+AQ  A+   +  V L  +  + V  S+  V   + +G   YGV TGFG  +  R +      LQ+ ++    AG+ G+ T      P    R  M +++ +L QG SGI+ + L  +  +L   ITP +P +G++ ASGDL PLS++A  + G
Sbjct:   12 VTLAQWRALYRGA-EVTLDPACAQAVLRSAQTVEAIVARGEPVYGVNTGFGKLASVRIERDDLQTLQRNIVLSHAAGV-GDPT------PVPVVRLMMALKLTSLAQGASGIQPDTLALLEAMLRQGITPVVPCQGSVGASGDLAPLSHLAAVMIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_XANAC (Histidine ammonia-lyase OS=Xanthomonas axonopodis pv. citri GN=hutH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 48/156 (30.77%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +T+AQ  A+   +  V L ++    V  S+  V   + +G   YGV TGFG  +  R +     ALQ+ ++    AG+           P    R  M +++ +L QG SG++ + L  +  +L   ITP +P +G++ ASGDL PLS++A  + G
Sbjct:   12 VTLAQWRALYRGA-EVALDDACAAAVLRSAQTVEAIVARGEPVYGVNTGFGKLASVRIEREDLQALQRNIVLSHAAGV-------GEPTPVPVVRLMMALKLTSLAQGASGVQPDTLALLDAMLRAGITPVVPCQGSVGASGDLAPLSHLAAAMIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_RHORT (Histidine ammonia-lyase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  436 ASSNWVMESMNKGTDS-YGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            A+S  V+ ++  G  + YG+ TGFG  +H+R       ALQ  LI         + T     +  +T R  + ++  +L  G SGIR EI++A+  L N ++ P +P +G++ ASGDL PL+++   L G
Sbjct:   38 AASQAVVAAIAGGESAVYGINTGFGKLAHKRIAPADLEALQTNLI-------LSHATGMGAPIADATVRLILAIKAASLAVGASGIRAEIVDALLALANADVLPVIPSKGSVGASGDLAPLAHLCCALLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_CAUCR (Histidine ammonia-lyase OS=Caulobacter crescentus GN=hutH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  397 NVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +  L+ESA   +  S+  V   + KG   YG+ TGFG  +  R  +     LQ+ ++    AG+           P    R  M +++ +L QG SG+R E +  + ++L   +TP +P +G++ ASGDL PLS++A  + G
Sbjct:   24 SARLAESAWPVIAESAAAVQRILAKGEPVYGINTGFGKLASVRIGDADLETLQRNIVLSHAAGV-------GEPSPVPVIRLMMALKLASLAQGASGVRVETVRMLEEMLVEGLTPVVPCQGSVGASGDLAPLSHMAATMIG 158          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_CAUCN (Histidine ammonia-lyase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  397 NVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +  L+ESA   +  S+  V   + KG   YG+ TGFG  +  R  +     LQ+ ++    AG+           P    R  M +++ +L QG SG+R E +  + ++L   +TP +P +G++ ASGDL PLS++A  + G
Sbjct:   28 SARLAESAWPVIAESAAAVQRILAKGEPVYGINTGFGKLASVRIGDADLETLQRNIVLSHAAGV-------GEPSPVPVIRLMMALKLASLAQGASGVRVETVRMLEEMLVEGLTPVVPCQGSVGASGDLAPLSHMAATMIG 162          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SILPO (Histidine ammonia-lyase OS=Silicibacter pomeroyi GN=hutH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 42/155 (27.10%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  358 TVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            T+  +A I    + V L  + R  V A++  +  +       YGV TGFG  +  +   ++   LQ+ LI     G+          +P    R  M++++ +L +G SG+R+E++  + ++L  ++TP +P++G++ ASGDL PL+++   + G
Sbjct:   12 TLEHLARIYFDESPVRLDPACRPAVEAAAARIRAAAAGDVPVYGVNTGFGKLASLKVAPQDTATLQRNLILSHCCGV-------GAPIPRRMARLMMVLKLLSLGRGASGVRWELITLLQEMLARDVTPVIPVQGSVGASGDLAPLAHMTAVIIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_AGRT5 (Histidine ammonia-lyase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hutH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 45/163 (27.61%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            + L    +T+A +AAI   +   +L  S   G+  ++  + E        YG+ TGFG  +  +    +   LQ+ LI     G+          LP +  R  M +++ +L +G SG+R E++  I  +L   + P +P +G++ ASGDL PL+++A  + G
Sbjct:    6 ITLHPGAVTLADLAAIYWENGTAKLDRSFDAGIEKAAARIAEIAAGNAPVYGINTGFGKLASIKIDAADVATLQRNLILSHCCGV-------GVPLPENVVRLIMALKLVSLGRGASGVRLELVRLIEAMLEKGVIPVIPEKGSVGASGDLAPLAHMAAVMMG 161          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_RHOSK2.608e-1230.97Histidine ammonia-lyase OS=Rhodobacter sphaeroides... [more]
HUTH_XANCP9.911e-1232.05Histidine ammonia-lyase OS=Xanthomonas campestris ... [more]
HUTH_XANCB9.911e-1232.05Histidine ammonia-lyase OS=Xanthomonas campestris ... [more]
HUTH_XANC89.911e-1232.05Histidine ammonia-lyase OS=Xanthomonas campestris ... [more]
HUTH_XANAC1.294e-1130.77Histidine ammonia-lyase OS=Xanthomonas axonopodis ... [more]
HUTH_RHORT1.294e-1133.08Histidine ammonia-lyase OS=Rhodospirillum rubrum (... [more]
HUTH_CAUCR1.294e-1130.99Histidine ammonia-lyase OS=Caulobacter crescentus ... [more]
HUTH_CAUCN1.294e-1130.99Histidine ammonia-lyase OS=Caulobacter crescentus ... [more]
HUTH_SILPO2.208e-1127.10Histidine ammonia-lyase OS=Silicibacter pomeroyi G... [more]
HUTH_AGRT52.884e-1127.61Histidine ammonia-lyase OS=Agrobacterium tumefacie... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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