CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_HALS3 (Probable histidine ammonia-lyase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=hutH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V + GE+LT A V A+A     V ++  ARE V  S   + + +      YGV TGFG+ S  R    +  ALQ  L+R   AG    G+E    L  +  RA ++ R+N L +GYSGIR  +L+ +  LLN  + P +P RG++ ASGDL PL++++  L G
Sbjct:    6 VVIDGESLTPAAVDAVARHDAPVSIAAGAREAVRESRARIADVLGGDEAVYGVNTGFGSMSDTRIDAADREALQANLVRSHAAGA---GSE----LDTAAVRALLVTRLNALAKGYSGIRERVLDVLVGLLNEGVHPVVPSRGSLGASGDLAPLAHMSRVLIG 161          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_CHLSY (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 61/164 (37.20%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTN---VELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V L GE+LT+ QV A+A        V L+  AR+ V  ++  V + + +G  +YG+TTGFGA   R        Q E +++        G      +P  TTRA ML+R NTL +G+SG+R + +E +  +LN  I P +P +G++ ASGDL PL+++A  L G
Sbjct:    6 VILDGESLTIEQVLAVAYGQPGTPVVRLAPIARQRVERAAQAVQDLLARGVVAYGITTGFGAFKDRVIAPD---QVERLQYNILVSHAVGVGPVFDIP--TTRAIMLIRANTLARGHSGVRLQTVERLLDMLNQGIHPRIPCKGSLGASGDLAPLAHMALPLIG 164          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_CHLAA (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 61/164 (37.20%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTN---VELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V L GE+LT+ QV A+A        V L+  AR+ V  ++  V + + +G  +YG+TTGFGA   R        Q E +++        G      +P  TTRA ML+R NTL +G+SG+R + +E +  +LN  I P +P +G++ ASGDL PL+++A  L G
Sbjct:    6 VILDGESLTIEQVLAVAYGQPGTPVVRLAPIARQRVERAAQAVQDLLARGVVAYGITTGFGAFKDRVIAPD---QVERLQYNILVSHAVGVGPVFDIP--TTRAIMLIRANTLARGHSGVRLQTVERLLDMLNQGIHPRIPCKGSLGASGDLAPLAHMALPLIG 164          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ANASK (Histidine ammonia-lyase OS=Anaeromyxobacter sp. (strain K) GN=hutH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 60/161 (37.27%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  340 LGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L GETLT+ QV A+AT +    L+ +ARE V  S   V   +  G   YG+ TGFG  +  R        LQ+ L+    AG+          LP    RA +L+R N L +G SGIR   L+ +  +L   + P +P RG++ ASGDL PL+++A  L G
Sbjct:    6 LDGETLTLEQVRAVATGAARAALAPAARERVRRSRALVDARLEDGEAHYGINTGFGTLAEVRIPRADLERLQRNLVLSHAAGV-------GAPLPLPEARALVLLRANVLAKGVSGIRERTLDLLLAMLERGVVPVVPERGSVGASGDLAPLAHLALVLIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ANAD2 (Histidine ammonia-lyase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=hutH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 60/161 (37.27%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  340 LGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L GETLT+ QV A+AT +    L+ +ARE V  S   V   +  G   YG+ TGFG  +  R        LQ+ L+    AG+          LP    RA +L+R N L +G SGIR   L+ +  +L   + P +P RG++ ASGDL PL+++A  L G
Sbjct:    6 LDGETLTLEQVRAVATGAARAALAPAARERVRRSRALVDARLEDGEAHYGINTGFGTLAEVRIPRADLERLQRNLVLSHAAGV-------GAPLPLPEARALVLLRANVLAKGVSGIREHTLDLLLAMLERGVVPVVPERGSVGASGDLAPLAHLALVLIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STIAU (Histidine ammonia-lyase OS=Stigmatella aurantiaca GN=hutH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  325 KPVVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +P +N+ G+TL + ++  +A  +  VEL+ +A   V A+ + V       T SYG+ TGFG  +  R   K+   LQ+ LI    AG+          LP    R  +L+R N L +GYSGIR E L    ++LN ++ P +P RG++ ASGDL PL+++A    G
Sbjct:    3 RPRLNIDGDTLKLEEILQVARHTVTVELAPAAAARVKAARDLVDRVAAGDTPSYGINTGFGTLAEVRIDKKDLRELQRNLILSHAAGV-------GSPLPLPEARVLLLLRCNVLAKGYSGIRPETLALALEMLNRDVVPVVPERGSVGASGDLAPLAHLALVFIG 161          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SHEWM (Histidine ammonia-lyase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hutH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 47/155 (30.32%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  352 TLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            TLT++Q+  I+ +   +EL++ A   +  SS  V + +++G   YG+ TGFG  ++ + ++     K+L     + +  +   +   +  +T R  M++++N+L +G+SGIR E++  + +L+N  + PC+P +G++ ASGDL PLS+++  L G
Sbjct:   10 TLTLSQIRDISRNKLTLELADEAIADINISSGIVQKIIDEGRTVYGINTGFGLLANTKIED-----KDLQLLQRSIVLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIQLVNAEVYPCVPEKGSVGASGDLAPLSHMSLTLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPA (Histidine ammonia-lyase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hutH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 51/157 (32.48%), Postives = 90/157 (57.32%), Query Frame = 1
Query:  352 TLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            TLT+AQ+  I+     +EL+ESA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++   L G
Sbjct:   10 TLTLAQIREISRGKVTLELAESAIADINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAGVYPCVPEKGSVGASGDLAPLSHMCLPLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_GLOVI (Histidine ammonia-lyase OS=Gloeobacter violaceus GN=hutH PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 59/161 (36.65%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  340 LGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L G +L V  + A+A     V LS ++ E V  S  +V   +      YG+TTGFG   +RR        LQ+ L+    AG+                RA +L+R NTL QGYSG+R E L+ +  +LN  + P +P RG++ ASGDL PL+++A  LTG
Sbjct:   10 LDGCSLAVDDLVAVARGGVPVRLSPASLELVRRSRAFVEALLEGDEIVYGITTGFGYFKNRRIPRSAVEQLQQNLLMSSAAGL-------GEPFGREVVRAMLLLRANTLAQGYSGVRPETLQLLVAMLNRGVHPVVPCRGSVGASGDLAPLAHLALVLTG 163          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_MYXXD (Histidine ammonia-lyase OS=Myxococcus xanthus (strain DK 1622) GN=hutH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 61/166 (36.75%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  325 KPVVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +P + + G+TL + ++  +A +   VELS  A   V AS   V       T +YG+ TGFG  +  R   K+   LQ+ LI     G+   GT     LP    RA +L+R N L +GYSGIR E L     +LN ++ P +P RG++ ASGDL PL+++A    G
Sbjct:    3 RPRILIDGDTLKLEEILQVARNEATVELSPDAATRVRASRALVDRVAAGDTPAYGINTGFGTLAEVRIDKKDLRDLQRNLILSHACGV---GTP----LPLPEARALLLLRCNVLAKGYSGIRMETLALALDMLNRDVVPVVPERGSVGASGDLAPLAHLALVFIG 161          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_HALS32.203e-1938.04Probable histidine ammonia-lyase OS=Halobacterium ... [more]
HUTH_CHLSY2.203e-1937.20Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_CHLAA2.203e-1937.20Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_ANASK2.203e-1937.27Histidine ammonia-lyase OS=Anaeromyxobacter sp. (s... [more]
HUTH_ANAD22.203e-1937.27Histidine ammonia-lyase OS=Anaeromyxobacter dehalo... [more]
HUTH_STIAU2.877e-1935.54Histidine ammonia-lyase OS=Stigmatella aurantiaca ... [more]
HUTH_SHEWM4.908e-1930.32Histidine ammonia-lyase OS=Shewanella woodyi (stra... [more]
HUTH_SHEPA4.908e-1932.48Histidine ammonia-lyase OS=Shewanella pealeana (st... [more]
HUTH_GLOVI6.409e-1936.65Histidine ammonia-lyase OS=Gloeobacter violaceus G... [more]
HUTH_MYXXD1.093e-1836.75Histidine ammonia-lyase OS=Myxococcus xanthus (str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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