CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_DESPS (Histidine ammonia-lyase OS=Desulfotalea psychrophila GN=hutH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT+A++  +A +   V L E  +  + AS   V E + +G   YG+ TGFG  ++    N     LQ+ LI    AG+          +  ST R  M++++N+L +GYSGIR E++EA+ +LLN  + P +P +G++ ASGDL PL++++  L G
Sbjct:   12 LTLAELRRMAKAPVGVRLEEKCKGKINASVQTVGEVIRQGRVIYGINTGFGLLANTIIPNEELEHLQRSLILSHAAGV-------GAFMADSTVRLMMVLKINSLARGYSGIRLEVIEALVQLLNAEVYPSVPQKGSVGASGDLAPLAHMSIVLLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPL (Histidine ammonia-lyase OS=Legionella pneumophila (strain Lens) GN=hutH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.436e-18
Identity = 52/154 (33.77%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L++  +  I     +  L+ESA E + AS   V + +++    YG+ TGFG+ +++ T +   L KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G
Sbjct:   12 LSLLSIKQILDEGQSCVLAESAFELINASHQTVRKVIDEKKTVYGINTGFGSLANQ-TISADCL-KELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPA (Histidine ammonia-lyase OS=Legionella pneumophila (strain Paris) GN=hutH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.436e-18
Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L++  +  I     +  L+E A E + AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP S     +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G
Sbjct:   12 LSLVSIKQILDEELSCVLAEHAFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDSVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BACSK (Histidine ammonia-lyase OS=Bacillus clausii (strain KSM-K16) GN=hutH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.436e-18
Identity = 57/164 (34.76%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +V L G +LT+  + AI      V LS+S    + AS   V + +  G   YG+ TGFG  S  +        LQ+ LI     G+ G  ++         ++A M++R N L +G+SG+R E++E + +L+N +I PC+P +G++ ASGDL PLS++A  L G
Sbjct:    1 MVILTGRSLTLDDMEAILYKGVKVGLSQSCINEIEASRRAVEKIVQDGRTVYGINTGFGKFSDVQIAAADTEELQRNLILSHACGVGGYFSDE-------ISQAMMVLRANALAKGFSGVRLEVVEMLLELINKDIYPCIPSQGSLGASGDLAPLSHLALVLIG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SHESH (Histidine ammonia-lyase OS=Shewanella sediminis (strain HAW-EB3) GN=hutH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 48/157 (30.57%), Postives = 91/157 (57.96%), Query Frame = 1
Query:  352 TLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            TLT++Q+  I+    ++EL++SA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PL+++   L G
Sbjct:   10 TLTLSQIREISRGKVSLELADSAINDINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAEVYPCVPEKGSVGASGDLAPLAHMCLPLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_VIBCH (Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 50/156 (32.05%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L++ Q+  ++ S   + L   A   +  S+  V + +++G   YG+ TGFG  ++ +   ++   LQK ++    AGI          +   T R  ML+++N+L +GYSGIR E+++A+ +L+N+ I PC+P +G++ ASGDL PL++++  L G
Sbjct:   11 LSLKQLRQVSRSPVVLSLDPEAIPAIAESAQVVEQVISEGRTVYGINTGFGLLANTKIAPQDLETLQKSIVLSHAAGI-------GELMSDETVRLMMLLKINSLARGYSGIRLEVIQALIELVNNQIYPCVPKKGSVGASGDLAPLAHMSTVLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PSYWF (Histidine ammonia-lyase OS=Psychrobacter sp. (strain PRwf-1) GN=hutH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNG--GALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT+AQ+  +  S   V L +SA + + AS + V E + +   +YG+ TGFG  +  R  +   G LQ  LI   + G       +   L     R  M+++V +L QG+SG+R ++++ +  L+NH+I P +P +G++ ASGDL PLS++   L G
Sbjct:   14 LTLAQLRQVYDSPVQVSLDDSAYKDIDASHDCVKEIIARDKSAYGINTGFGLLAKTRISDDQLGLLQYNLIVSHSVG-------TGERLEDGVVRLIMVMKVASLAQGFSGVRRKVIDGLIGLINHDIIPHIPAKGSVGASGDLAPLSHMTLTLLG 162          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_THEVO (Probable histidine ammonia-lyase OS=Thermoplasma volcanium GN=hutH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ + G+ LT+  V +++     VELS  AR  V       ++ ++ G   YGV TGFG   + +        LQ+ LIR  +AG+          LP    R+ M++R NTL +GYS +  E+++A+  ++N ++ P +P  G++ ASGDL PL++I   + G
Sbjct:    1 MIEIDGDNLTLEDVYSVSVLHEPVELSTKARNKVAEIHRKFLDLISSGQTIYGVNTGFGGLLNIKISREEEIELQRNLIRSHSAGV-------GKYLPTDVVRSIMVIRANTLAKGYSAVSTELIDALLAMINKDVVPAVPEFGSVGASGDLAPLAHIGLAMMG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_NATTJ (Histidine ammonia-lyase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hutH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +++L GE L   ++  +      VELS  A+E + AS   + +   K +  YGVTTGFG  S     ++N   LQ+ LI   +AG+                R  ML R N+L +G+SGIR E ++ +  +LN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    1 MIHLTGENLKFKEIEKVINHGEQVELSTQAKENIIASRRLIDDLTEKESIVYGVTTGFGKFSDTFISSENLQQLQENLILSHSAGV-------GEPFSEQVVRGMMLFRANSLAKGHSGIRLETVQLLIDMLNKGVHPIIPSKGSLGASGDLAPLAHMVLVMIG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPC (Histidine ammonia-lyase OS=Legionella pneumophila (strain Corby) GN=hutH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 49/154 (31.82%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L++  +  I     +  L+E+A E + AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G
Sbjct:   12 LSLLSIKQILDEELSCVLAENAFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLG 160          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_DESPS1.093e-1835.26Histidine ammonia-lyase OS=Desulfotalea psychrophi... [more]
HUTH_LEGPL2.436e-1833.77Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_LEGPA2.436e-1832.47Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_BACSK2.436e-1834.76Histidine ammonia-lyase OS=Bacillus clausii (strai... [more]
HUTH_SHESH3.181e-1830.57Histidine ammonia-lyase OS=Shewanella sediminis (s... [more]
HUTH_VIBCH4.154e-1832.05Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH... [more]
HUTH_PSYWF4.154e-1833.97Histidine ammonia-lyase OS=Psychrobacter sp. (stra... [more]
HUTH_THEVO5.426e-1831.71Probable histidine ammonia-lyase OS=Thermoplasma v... [more]
HUTH_NATTJ5.426e-1832.93Histidine ammonia-lyase OS=Natranaerobius thermoph... [more]
HUTH_LEGPC5.426e-1831.82Histidine ammonia-lyase OS=Legionella pneumophila ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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