CK933023
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.668e-30 Identity = 83/231 (35.93%), Postives = 123/231 (53.25%), Query Frame = 2 Query: 80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769 PR GSL F PRKRA R +++++P++D RL AF YKAGM+H + P S +E +TI+E Y + R L +L VWA +L +E+ R+ + E +K+++ LE +K VRVL HT K+ L +KK ++EI++ G I E+++YA KQ+ + VFQ+ E++D IGVTKGKG++G V RWGV Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGV 216
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.402e-30 Identity = 80/234 (34.19%), Postives = 122/234 (52.14%), Query Frame = 2 Query: 68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ L ++ R+ E KK+ A L+ + + A+ VR + HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGI 215
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 9.668e-30 Identity = 80/234 (34.19%), Postives = 122/234 (52.14%), Query Frame = 2 Query: 68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ L ++ R+ E KK+ A L+ + + A+ VR + HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGI 215
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29 Identity = 80/237 (33.76%), Postives = 121/237 (51.05%), Query Frame = 2 Query: 68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778 K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++ S + +E VT+IET Y KT G++ VW+ +L + + RR + + ++ ++ AS VRV+ +TQ + G+ +K +ME ++ GG + E +DYA K+I V VF + +ID+I VTKGKG++G V RWGV L Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITL 215
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.674e-29 Identity = 82/244 (33.61%), Postives = 130/244 (53.28%), Query Frame = 2 Query: 56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778 M HRK PR GS G PRKRA+ +++P ++P +L F+GYK GM+HI +KP S + KE V++IET YV P+G + T + +SE++ + + + + D K+ ++ +L++I + + RVL TQ + + L +KK ++E+QV GG I +++Y K + V VF++ ++IDIIGVTKGKG++GVV R+GV L Sbjct: 1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-----------KVTRLKID--KEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVEL 230
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.110e-28 Identity = 78/235 (33.19%), Postives = 116/235 (49.36%), Query Frame = 2 Query: 68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769 + PR GS+ F PRKRAAR +VK++P+ D+P L A GYKAGMTH++ + S E VTI+E Y KT RGL++L V A +++RR+ Y+ + + I++ +E Y + VRV+ HT R + + +KK + E + G T EK +YA K + +F + +D I VTKGKG++G V RWG+ Sbjct: 3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL------------TPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGI 216
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27 Identity = 83/240 (34.58%), Postives = 121/240 (50.42%), Query Frame = 2 Query: 56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769 M HRK PR GS G PRKRA K +P + +P +L F+GYKAGMTH+ +KP S + KE VTI+E+ Y +G L L WA EE ++ K + D K + L +K + +R+L TQ + L +K+ ++EIQ+ GG+I ++++Y KQIPV VF++ ++ DIIGVTKGKG++GV+ R+ V Sbjct: 1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKRYSV 226
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.491e-27 Identity = 80/235 (34.04%), Postives = 109/235 (46.38%), Query Frame = 2 Query: 68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 772 K PR GSL F PRKRA K K++P+ + L F GYK GMTH++ + S KE VTIIE Y K G +L +WA+ L ++ RR Y++ KK L + + LA+TQ M G+ +K LMEI+V GG IA++ +YA+G K+I + V + DI +T GKG +G V RWGVT Sbjct: 3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRRVTS-------------PKNYDSTAAKKKYSDALAA--GLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVT 220
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.911e-26 Identity = 75/234 (32.05%), Postives = 119/234 (50.85%), Query Frame = 2 Query: 80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 775 PR GS+GF PR RAA + ++P DD +P L F GYKAGM+H+V ++P S +E VT++ET Y TP G R L VW + E++ R + ++ + + I+ L+ + + VRV+ HT + + +K+ +ME +V GG+++++VD+A + + V VF+ E D+ G+TKGKG +G V RWGV + Sbjct: 7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQK 222
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26 Identity = 75/242 (30.99%), Postives = 118/242 (48.76%), Query Frame = 2 Query: 53 RMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 772 R R PR GSL F PRKRA+R +++++P ++ R+ F GYKAGMTH + + P S +E VTI++ Y TP G R + WA+ E R + +G+ ++E++ V +RV+ TQ +K G+ +KK +ME ++ G + E+ +YA ++I VF + E++D+ +TKGKG++GVV RWGVT Sbjct: 3 RGGRRNPGRPRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVFT-----------------VPKDGEAGDLDKIEELVDEGIVEEIRVIVATQPKK-AGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVT 223 The following BLAST results are available for this feature:
BLAST of CK933023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933023 ID=CK933023; Name=CK933023; organism=Citrus sinensis; type=EST; length=780bpback to top |