CK933032

Overview
NameCK933032
Unique NameCK933032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:1..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 9.725e-91
Identity = 168/205 (81.95%), Postives = 183/205 (89.27%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMV-AQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYDIKAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E+ AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIE++VDVKTTDN+TLRLFCI FTKR  NQVKRTCYAQ+SQIRQIR KMREIM+  +A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEV
Sbjct:   28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEV 232          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.974e-85
Identity = 153/204 (75.00%), Postives = 174/204 (85.29%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYDIKAP+ F VRNVGKTLVTRTQGTKIASE LK RVFEVSL DL   E+ A+RK+RLR EDVQG+N LTNFWGM+FTTDKLRSLVRKW TLIEA+VDVKTTD +TLR+FCI FTK+   Q+KRTCYAQ++QIRQIR+KM EI+  +A SCDLK LV KFI E IG++IEK+   IYPLQN FIRKVK+LKAPKFD+ KLMEV
Sbjct:   28 DWYDIKAPTMFTVRNVGKTLVTRTQGTKIASEALKGRVFEVSLADLQKNEDDAFRKMRLRVEDVQGRNCLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQGQIKRTCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEV 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.714e-83
Identity = 149/204 (73.04%), Postives = 178/204 (87.25%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYDIKAPS F VRN+GKTLV+RTQGTKIAS+GLK R+FE+SL DL N+E+ ++RK++L+ EDVQGKNVLTNF GM+FTTDK+RSLVRKW +LIE +VDVKTTD +TLR+FCIGFTKR  +Q KRTCYAQ++QIR+IR KM EI+  +  +CDLK LV KFI EVIG+EIEK+ + IYPLQNV+IRKVKILKAPKFDL KLMEV
Sbjct:   28 DWYDIKAPSMFSVRNIGKTLVSRTQGTKIASDGLKGRIFEISLADLNNDEDQSFRKMKLKCEDVQGKNVLTNFAGMDFTTDKIRSLVRKWFSLIECFVDVKTTDGYTLRVFCIGFTKRRMDQAKRTCYAQSAQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKILKAPKFDLTKLMEV 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.914e-80
Identity = 145/204 (71.08%), Postives = 173/204 (84.80%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYDIKAPS F VRNVGKTLV R+QG K A++ LK R+ EVSLGDL  EEE ++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW TLIEA+VDVKTTD + LRLF IGFTKR P QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA+ SIYPLQNV++RK KILKAPKFD+ KLME+
Sbjct:   28 DWYDIKAPSIFDVRNVGKTLVNRSQGLKNANDSLKGRIIEVSLGDLNKEEEQSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.535e-78
Identity = 143/204 (70.10%), Postives = 169/204 (82.84%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYDIKAPS F  RNVGKTLV R+ G K A++ LK R+ E+SL DL N+EE A+RKI+LR ++VQGKN LTNF GM+F++DKLRSLVRKW TLIEA+VDVKTTD + LRLF IGFTKR P QV++T YAQ+SQIRQIR+KM EIM  +A+SCDLK LV+KFI E IGREIEKA   IYPLQNVF+ K KILKAPKFD+ KL+E+
Sbjct:   28 DWYDIKAPSIFEKRNVGKTLVNRSSGLKNANDSLKGRIVEISLADLNNDEEQAFRKIKLRIDEVQGKNCLTNFHGMSFSSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKILKAPKFDMSKLLEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 9.441e-78
Identity = 138/204 (67.65%), Postives = 171/204 (83.82%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYDIKAPS F VRNVGKTL  R+QG K A++ LK R+ EVSL DL  +EE ++RKI+LR +++QGKN LTNF GM+FT+DKLRSLVRKW TL+EA+VDVKTTD + LRLF IGFTKR P+QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA  SIYPLQNV++RK KILK+PKFD+ KL+E+
Sbjct:   28 DWYDIKAPSIFEVRNVGKTLANRSQGLKNANDSLKGRIIEVSLADLNKDEEQSFRKIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.233e-77
Identity = 138/204 (67.65%), Postives = 171/204 (83.82%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYDIKAPS F  RNVGKTLV R+QG K A++ L+ R+ EVSL DL  +EE ++RKI+LR +++QG+N LTNF GM+FT+DKLRSLVRKW TL+EA+VDVKTTD + LRLF IGFTKR P QVK+T YAQT+Q+R++R+KM EI+  +A SCDLK LV+KF+ E IGREIEKA+ SIYPLQNV+IRK KILKAPKFD+ KL+E+
Sbjct:   28 DWYDIKAPSIFETRNVGKTLVNRSQGLKNANDSLRGRIIEVSLADLNKDEEQSFRKIKLRVDEIQGRNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPTQVKKTTYAQTAQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.507e-75
Identity = 140/202 (69.31%), Postives = 165/202 (81.68%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLM 763
            DWY+IKAP  F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLFCI FTKR PNQVK+T YAQ+SQIR IR+KM EIM   A+SC L  L +K I EVIGREIEKAT  IYPLQNV +RKVK+LKAPKFDLG L+
Sbjct:   27 DWYNIKAPGTFAVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFCIAFTKRRPNQVKKTTYAQSSQIRAIRKKMVEIMARDASSCTLAQLTQKLIPEVIGREIEKATQGIYPLQNVHVRKVKLLKAPKFDLGALL 228          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.276e-74
Identity = 135/204 (66.18%), Postives = 167/204 (81.86%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAPS F VRN+GKTLVTRTQG K+AS+GLK RVFEVSL DL N+E+ ++RK RL +ED+QGKNVLTNF GM  TTDKLR+LV+KW TLIEA VDVKTTD + LRLFCIGFTKR PNQ+K+T YA++SQ R IR+KM ++M  + +  DLK  V K I + IG++IEK   SIYPL +VF+RKVK+LK PKFD+G+LM++
Sbjct:   28 DWYDVKAPSMFAVRNIGKTLVTRTQGKKLASDGLKGRVFEVSLADLQNDEQ-SFRKFRLISEDIQGKNVLTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDL 230          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.843e-74
Identity = 137/204 (67.16%), Postives = 166/204 (81.37%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNL 231          
The following BLAST results are available for this feature:
BLAST of CK933032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
RS3A_BRARA9.725e-9181.9540S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_CHLRE7.974e-8575.0040S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A_OSTLU5.714e-8373.0440S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_LENED5.914e-8071.0840S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_POSPM5.535e-7870.1040S ribosomal protein S1 OS=Postia placenta (strai... [more]
RS3A_LACBS9.441e-7867.6540S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_COPC71.233e-7767.6540S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_PYRTR1.507e-7569.3140S ribosomal protein S1 OS=Pyrenophora tritici-re... [more]
RS3A_SUBDO1.276e-7466.1840S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_ASPCL2.843e-7467.1640S ribosomal protein S1 OS=Aspergillus clavatus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933032 ID=CK933032; Name=CK933032; organism=Citrus sinensis; type=EST; length=770bp
GGGGCTCTTCACTCACAATGAACGAGCTAGGACTAGGTAGCAGCGGAGCC
GTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGG
ATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGC
CAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAA
ATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCA
GAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAA
TGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCC
AAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGAC
AAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGT
GGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGAT
TCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACC
AGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTC
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