CK933032

Overview
NameCK933032
Unique NameCK933032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:1..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.949e-63
Identity = 119/183 (65.03%), Postives = 146/183 (79.78%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 706
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V V+TTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A+SC L+ L  K I EVIGREIEKAT  IYPLQNV
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.949e-63
Identity = 122/206 (59.22%), Postives = 154/206 (74.76%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAPS F  R VG TLV RTQGTKIASEGLK RVFEVSL DL    + E ++RK RL AE VQG+NVL NF GM+ TTDKLR +V+KW TLIEA +DVKTTD + LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+
Sbjct:   29 DWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMEL 234          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_MONBE (40S ribosomal protein S3a OS=Monosiga brevicollis GN=34920 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.029e-63
Identity = 116/204 (56.86%), Postives = 159/204 (77.94%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            +WYD+KAPS F+ R VGKT V RT GTK++++GL+ RV+E+SL DL N++E  +RK++L+ E++QG   LTNF GM+ TTDKLRSLV+KW +LIEA+VDVKT D + LR+F IGFTK+  N  ++TCYAQ++Q R +R KM EIM  + A+CDLK  V K +   IG+EI+K   SI+PLQ+V+IRKVK+LK P+FD+ KL+E+
Sbjct:   28 EWYDVKAPSYFKKRQVGKTPVNRTAGTKLSADGLRGRVYEMSLADL-NDDESTFRKVKLQVEEIQGTECLTNFHGMSLTTDKLRSLVKKWRSLIEAFVDVKTNDGYVLRIFSIGFTKKQANSDRKTCYAQSAQKRALRAKMVEIM-QREATCDLKEFVSKLMPGTIGQEIQKKCQSIFPLQDVYIRKVKVLKKPRFDVSKLLEL 229          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PLAYO (40S ribosomal protein S3a OS=Plasmodium yoelii yoelii GN=PY02291 PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 5.561e-62
Identity = 116/204 (56.86%), Postives = 154/204 (75.49%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            +WYD+ AP  F VR  GKTLVT+T G K+A++GLK R++EV+L DL N+E+ A++KI+L  + +  ++  T+F G++ T DKL SL+RK +TLIE   DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+K I E IG+E+EK    I+PLQNV IRKVKILK PK D+ KLME+
Sbjct:   28 EWYDLNAPKMFMVRKFGKTLVTKTIGKKLATDGLKGRIYEVNLADLNNDEDQAHKKIKLICDHIINRDCYTDFCGLSITRDKLCSLIRKGYTLIEGCTDVKTIDNYHLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMHAEASKVLLKDLVKKIIPESIGKEVEKQCKKIFPLQNVLIRKVKILKRPKLDISKLMEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.561e-62
Identity = 119/201 (59.20%), Postives = 157/201 (78.11%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLM 763
            +YDI+APS F    VGKTLV ++ GT  +++ LK RVFEV+LGDL   E++AYRK++LRA++VQG  +LTNF GM+FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EI+  + ++  L  L  K I EVI REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+
Sbjct:   17 FYDIQAPSTFTNTYVGKTLVNKSAGTFSSTDALKGRVFEVNLGDL-TLEDNAYRKVKLRADEVQGNKILTNFHGMDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLL 216          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.262e-62
Identity = 115/206 (55.83%), Postives = 153/206 (74.27%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM+ TTDK RS+V+KW TLIEA V+ KT+D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTSDGYLLRIFCIGFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLEL 234          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_DROVI (40S ribosomal protein S3a OS=Drosophila virilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.485e-62
Identity = 115/206 (55.83%), Postives = 152/206 (73.79%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM+ TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLEL 234          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_DROPS (40S ribosomal protein S3a OS=Drosophila pseudoobscura pseudoobscura GN=RpS3A PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.239e-61
Identity = 115/206 (55.83%), Postives = 152/206 (73.79%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM+ TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLEL 234          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_DROPE (40S ribosomal protein S3a OS=Drosophila persimilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.239e-61
Identity = 115/206 (55.83%), Postives = 152/206 (73.79%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM+ TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLEL 234          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_DROME (40S ribosomal protein S3a OS=Drosophila melanogaster GN=RpS3A PE=1 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 1.239e-61
Identity = 115/206 (55.83%), Postives = 152/206 (73.79%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM+ TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLEL 234          
The following BLAST results are available for this feature:
BLAST of CK933032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
RS3A_PODAN2.949e-6365.0340S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_BOMMO2.949e-6359.2240S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_MONBE5.029e-6356.8640S ribosomal protein S3a OS=Monosiga brevicollis ... [more]
RS3A_PLAYO5.561e-6256.8640S ribosomal protein S3a OS=Plasmodium yoelii yoe... [more]
RS3A_LODEL5.561e-6259.2040S ribosomal protein S1 OS=Lodderomyces elongispo... [more]
RS3A_DROGR7.262e-6255.8340S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_DROVI9.485e-6255.8340S ribosomal protein S3a OS=Drosophila virilis GN... [more]
RS3A_DROPS1.239e-6155.8340S ribosomal protein S3a OS=Drosophila pseudoobsc... [more]
RS3A_DROPE1.239e-6155.8340S ribosomal protein S3a OS=Drosophila persimilis... [more]
RS3A_DROME1.239e-6155.8340S ribosomal protein S3a OS=Drosophila melanogast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004348_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933032 ID=CK933032; Name=CK933032; organism=Citrus sinensis; type=EST; length=770bp
GGGGCTCTTCACTCACAATGAACGAGCTAGGACTAGGTAGCAGCGGAGCC
GTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGG
ATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGC
CAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAA
ATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCA
GAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAA
TGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCC
AAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGAC
AAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGT
GGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGAT
TCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACC
AGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTC
back to top