CK933032

Overview
NameCK933032
Unique NameCK933032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:1..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 64/194 (32.99%), Postives = 95/194 (48.97%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 742
            WY I AP  F    VG T            E + +RV EV+L D+  +   ++ K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+   IRK+K+L+ P+
Sbjct:   18 WYIIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19
Identity = 61/195 (31.28%), Postives = 98/195 (50.26%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            W+ + AP  F +  +G+T       +K+       R  E +L +L N+   ++ Y+K+  +   V G N  T FW    T + L SL R+  + IE  VDV T D + LR+  + FT R           +TSQ R IR  MR+I+V +A+S +    +++ +   +  EI K    IYP++ V IRK+++L  P
Sbjct:   19 WFTLIAPEYFGMAELGET--PADDASKVVG-----RTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVR---------RCKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PYRHO (30S ribosomal protein S3Ae OS=Pyrococcus horikoshii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 64/194 (32.99%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 742
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+   IRK+K+L  P+
Sbjct:   20 WYIIYAPDFFGGVEVGLTPADDP-------EKVMNRVVEVTLKDITGDFTKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_METKA (30S ribosomal protein S3Ae OS=Methanopyrus kandleri GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.297e-18
Identity = 62/197 (31.47%), Postives = 99/197 (50.25%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIA----EVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            WY I AP  F    VG+T            E +  RV E +LGD+L++    + K+  R  DV+G    + F G     D +RSLVR+  + I+  +DV T D + +R+  + FT R          A+TSQ R IR++M +++   A  CD    + + ++    E I  +I++A   IYP++   IRK ++L+ P
Sbjct:   11 WYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTR---------RAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEP 191          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 64/194 (32.99%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 742
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+   IRK+K+L  P+
Sbjct:   19 WYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_METBF (30S ribosomal protein S3Ae OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.098e-17
Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            +WY+I+AP+      VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A +DVKT D + +R             VK TC+    A++SQI+ IR  M  I+  +A+  D ++ +++ I   +   I +    IYPL+ V IRK ++  AP
Sbjct:   17 EWYNIEAPAYLNRAIVGNTMA----GDPSLLVG---RNIETTVGELTNDMTKNNTKVILRINNVVGDVATTDLMGHELTTDYIRSIVKRQTSRIDANIDVKTKDGYIIR-------------VKPTCFTIKRARSSQIKAIREMMVNIVAKRASEADFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAAP 194          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_METAC (30S ribosomal protein S3Ae OS=Methanosarcina acetivorans GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.449e-17
Identity = 63/198 (31.82%), Postives = 99/198 (50.00%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            +WY+I+AP       VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDVKT D + +R             VK TC+    A++SQ++ IR  M EI+  +AA  D ++ +++ I   +   I +    IYPL+ V IRK ++   P
Sbjct:   17 EWYNIEAPVYLNRAIVGNTMA----GDPSLLVG---RNVETTVGELTNDMTKNNTKVILRINNVVGDIATTDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIR-------------VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEVETIP 194          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.449e-17
Identity = 58/193 (30.05%), Postives = 90/193 (46.63%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            WY++ AP+ F    +G T            E L  RV E +L D+  +    + K+  +   + G   LT F G     D +RSLVR+  + I+   D+ T D + LR+  +  T    N         TSQ + IRR MRE +  +A+   L  LV++ ++  I  EI +    IYP++ V + K K+L  P
Sbjct:   18 WYEVVAPTSFGGITLGSTPADDP-------EKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPIRRVEVYKTKLLLIP 194          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_METMA (30S ribosomal protein S3Ae OS=Methanosarcina mazei GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 61/198 (30.81%), Postives = 100/198 (50.51%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            +WY+I+AP+      VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDV+T D F +R             VK TC+    A++SQ++ IR  M +I+  +A+  D ++ +++ I   +   I +    IYPL+ V IRK ++   P
Sbjct:   17 EWYNIEAPAYLNRVIVGTTMA----GDPSLLVG---RNVETTVGELTNDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIR-------------VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAE (30S ribosomal protein S3Ae OS=Pyrobaculum aerophilum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 56/193 (29.02%), Postives = 93/193 (48.19%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            W+ + APS      +G   +      +  ++ L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  T D +RSLVRK  + + A  +VKT D   +R+  +G T         T    T+Q   +R+KM E +V +AA  D    +++ +   +  ++      I P++ V I K+K+LK P
Sbjct:   27 WFSVYAPSY-----LGGVFLAEVPANE--AQKLLMRTLEVSLYDITKDISHLPIKLKFQIHRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAVLGIT---------THRIGTAQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVLKYP 203          
The following BLAST results are available for this feature:
BLAST of CK933032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
RS3A_PYRFU3.413e-1932.9930S ribosomal protein S3Ae OS=Pyrococcus furiosus ... [more]
RS3A_ARCFU7.603e-1931.2830S ribosomal protein S3Ae OS=Archaeoglobus fulgid... [more]
RS3A_PYRHO9.930e-1932.9930S ribosomal protein S3Ae OS=Pyrococcus horikoshi... [more]
RS3A_METKA1.297e-1831.4730S ribosomal protein S3Ae OS=Methanopyrus kandler... [more]
RS3A_PYRAB2.889e-1832.9930S ribosomal protein S3Ae OS=Pyrococcus abyssi GN... [more]
RS3A_METBF1.098e-1731.3130S ribosomal protein S3Ae OS=Methanosarcina barke... [more]
RS3A_METAC5.449e-1731.8230S ribosomal protein S3Ae OS=Methanosarcina aceti... [more]
RS3A_DESK15.449e-1730.0530S ribosomal protein S3Ae OS=Desulfurococcus kamc... [more]
RS3A_METMA2.704e-1630.8130S ribosomal protein S3Ae OS=Methanosarcina mazei... [more]
RS3A_PYRAE3.532e-1629.0230S ribosomal protein S3Ae OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933032 ID=CK933032; Name=CK933032; organism=Citrus sinensis; type=EST; length=770bp
GGGGCTCTTCACTCACAATGAACGAGCTAGGACTAGGTAGCAGCGGAGCC
GTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGG
ATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGC
CAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAA
ATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCA
GAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAA
TGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCC
AAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGAC
AAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGT
GGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGAT
TCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACC
AGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTC
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