CK933032

Overview
NameCK933032
Unique NameCK933032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SULIN (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 59/205 (28.78%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 766
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SULIM (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 59/205 (28.78%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 766
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SULIL (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 59/205 (28.78%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 766
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SULIK (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 59/205 (28.78%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 766
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SULIA (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 59/205 (28.78%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 766
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_METTH (30S ribosomal protein S3Ae OS=Methanobacterium thermoautotrophicum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.531e-14
Identity = 56/193 (29.02%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            WY IK+P  F    +G T       ++     LK RV E ++ +L  +    Y K++ + + V G    T F G   TTD +RS++R+  + ++A V V+T D + L++  +  T R          A++SQ + +R+ + E +   A+    + LVE  +   I  EI      IYPL+ V I K ++L+ P
Sbjct:   18 WYVIKSPKLFGENEIGTT------PSRDPDFLLKRRV-EATMRELTGDFSKQYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSRVLEEP 194          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_METB6 (30S ribosomal protein S3Ae OS=Methanoregula boonei (strain 6A8) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 57/190 (30.00%), Postives = 96/190 (50.53%), Query Frame = 2
Query:  173 KAPSCFRVR---NVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLF--CIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 727
            KA S F+V    N+GK  +  T  +++  E +K R+ + +LG++ N+    + K+  +  +V G    T F G   T D LRSLV++  + I+ +V V T DN  +RL   C  F +           A  +Q   +R  +   +VAQA + DL +LV   ++  I +++ K   ++YP + V I K K+
Sbjct:   15 KAKSWFKVYTPDNLGKAYIGDTIASEV--ETVKGRIMQATLGEITNDYAKQHIKMSFKIAEVTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTKDNKKVRLTISCYTFAR-----------ANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVSGEISKDLFKLVKTLYPTRRVEIIKSKV 191          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SULAC (30S ribosomal protein S3Ae OS=Sulfolobus acidocaldarius GN=rps3ae PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-14
Identity = 65/198 (32.83%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 742
            WY I AP  F     G+ L+  T    I ++ L  ++ EV+L DL  +      H Y KI     ++ G  + T F+G   + D +RSLVR+  + I A VDV T D + LR+  +  T         T  A  SQ   IR+ + +I   +A   D    V+  I   +  +I +    IYPL+ V I K K+LKAPK
Sbjct:   18 WYVITAPKVF-----GEALLGSTPAYDI-NKALSRKI-EVTLYDLTGDYNLVYIHLYFKI---LGNISGDKLSTIFYGHELSRDYIRSLVRRKSSKINAVVDVTTKDGYMLRVKGLVLT---------TYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_HALMA (30S ribosomal protein S3Ae OS=Haloarcula marismortui GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 53/194 (27.32%), Postives = 88/194 (45.36%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 742
            WY ++AP  F    +GKT            + +  R  E +LG+L N+      K+  +  +V   +  T F     T D LRSLVR+  + +EAY+ V TTD++ +++  +  T         T  A  SQ + IRR M +++   A     + L++  +   +   I      IYPL+ V I+K  +   P+
Sbjct:   15 WYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLTFKINEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT---------TKKADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTLEARPE 192          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAR (30S ribosomal protein S3Ae OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.143e-13
Identity = 51/193 (26.42%), Postives = 91/193 (47.15%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            W+ + AP       +G   +     T+  +E L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  + D ++SLVRK  + + A  +VKT D   +R+  +  T              T+Q   +R+K+ E ++ +A+  D    +++ +   +  ++  A   I PL+ V   K+K+LK P
Sbjct:   27 WFAVHAPPY-----LGGVFLAEVPATE--AEKLLMRTLEVSLYDITKDISHLPVKLKFQIHRVEGLRALTRFKGLELSRDYVKSLVRKGTSKVVAITEVKTKDGMDMRVSVMVITAH---------RLGTAQKSAVRKKITETLLKKASEMDTSQFLKEVLEGTLAADLFIAAKKIAPLRKVEFAKIKVLKYP 203          
The following BLAST results are available for this feature:
BLAST of CK933032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
RS3A_SULIN1.938e-1428.7830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIM1.938e-1428.7830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIL1.938e-1428.7830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIK1.938e-1428.7830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIA1.938e-1428.7830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_METTH2.531e-1429.0230S ribosomal protein S3Ae OS=Methanobacterium the... [more]
RS3A_METB63.306e-1430.0030S ribosomal protein S3Ae OS=Methanoregula boonei... [more]
RS3A_SULAC4.317e-1432.8330S ribosomal protein S3Ae OS=Sulfolobus acidocald... [more]
RS3A_HALMA9.618e-1427.3230S ribosomal protein S3Ae OS=Haloarcula marismort... [more]
RS3A_PYRAR2.143e-1326.4230S ribosomal protein S3Ae OS=Pyrobaculum arsenati... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933032 ID=CK933032; Name=CK933032; organism=Citrus sinensis; type=EST; length=770bp
GGGGCTCTTCACTCACAATGAACGAGCTAGGACTAGGTAGCAGCGGAGCC
GTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGG
ATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGC
CAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAA
ATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCA
GAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAA
TGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCC
AAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGAC
AAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGT
GGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGAT
TCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACC
AGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTC
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