CK933032

Overview
NameCK933032
Unique NameCK933032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:1..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_HALLT (30S ribosomal protein S3Ae OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 54/193 (27.98%), Postives = 85/193 (44.04%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            WY + AP  F  + +G+TL           + +  R    +LG+L  +      K+  +  DV      T F     T D LRSLVR+  + +EA + V TTD++ +R+  +  T         T  A  SQ + IRR M + + A A     +S V+  +   +   I      IYPL+ V I+K+ +   P
Sbjct:   15 WYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLTFKITDVGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT---------TKKADRSQEKAIRRVMIDKVHAAAEDRTFESFVDAIVEGNLSSAIYGDAKLIYPLRRVEIQKLTLEARP 191          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_IGNH4 (30S ribosomal protein S3Ae OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 52/193 (26.94%), Postives = 82/193 (42.49%), Query Frame = 2
Query:  161 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 739
            WY+I  P  F   +VG+T     +  K+    +   +++++ GD      H Y  +++   D +     T F G     D +RSL R+  + IE   DV T D + LR+    FT             QTSQ R IR+  +E++        L  ++   +   I  EI      IYP++   I K K+L  P
Sbjct:   18 WYEIITPDVFNNVSVGQT--PADEAWKLIGRTVDTTLYDIT-GDFTYVHVHVY--LQINKVDEEALKAYTIFKGHELARDYIRSLTRRKSSKIEGIFDVWTKDGYGLRITVDTFT---------AYRCQTSQKRAIRKIQKEVIEEMVPQMTLDEVINAMLFGDIAEEISNRARKIYPIRRTEIYKSKVLYMP 196          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_METJA (30S ribosomal protein S3Ae OS=Methanocaldococcus jannaschii GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 45/159 (28.30%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  266 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 742
            RV E SL DL  +      ++  +   V G   +  ++G + T + ++S +R+  + I+A +DVKT D   +R      TK +     R   A T Q   IR+KM EI+ A A        V+  +   +  +I+     I+P++NV I K ++L   K
Sbjct:   53 RVAETSLRDLTGDPTKHMHRVYFKIFGVTGNKAIAQYYGHDTTREFMKSQIRRRRSRIDAILDVKTQDGHKIR------TKAMVLTAYR---ANTKQKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKSEVLSLAK 202          
The following BLAST results are available for this feature:
BLAST of CK933032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
RS3A_HALLT1.176e-1127.9830S ribosomal protein S3Ae OS=Halorubrum lacusprof... [more]
RS3A_IGNH43.421e-1126.9430S ribosomal protein S3Ae OS=Ignicoccus hospitali... [more]
RS3A_METJA9.953e-1128.3030S ribosomal protein S3Ae OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933032 ID=CK933032; Name=CK933032; organism=Citrus sinensis; type=EST; length=770bp
GGGGCTCTTCACTCACAATGAACGAGCTAGGACTAGGTAGCAGCGGAGCC
GTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGG
ATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGC
CAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAA
ATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCA
GAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAA
TGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCC
AAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGAC
AAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGT
GGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGAT
TCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACC
AGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTC
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