CK933032

Overview
NameCK933032
Unique NameCK933032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:1..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.538e-72
Identity = 134/202 (66.34%), Postives = 163/202 (80.69%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLM 763
            DWY IKAP+ F +R+VGKTLV R+ G K A++ LK R+FEVSL DL  +E+HA+RKI+LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IRRKM EI+  +A++C L+ L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+
Sbjct:   28 DWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLL 229          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 4.538e-72
Identity = 130/204 (63.73%), Postives = 166/204 (81.37%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.927e-72
Identity = 129/204 (63.24%), Postives = 167/204 (81.86%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F +RN+GKTLV+RTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L +EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVSRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLISEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.927e-72
Identity = 136/202 (67.33%), Postives = 160/202 (79.21%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLM 763
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+H++RKI+LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V V TTD++ LRLF I FTKR PNQ+K+T YA TSQIR IRRKM EI+  +A+SC L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHSFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVMTTDHYLLRLFAIAFTKRRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALM 229          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.741e-72
Identity = 131/202 (64.85%), Postives = 164/202 (81.19%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLM 763
            D Y +KAPS F+ R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+
Sbjct:   28 DEYSVKAPSTFQTRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALL 229          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 1.011e-71
Identity = 130/204 (63.73%), Postives = 165/204 (80.88%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L NF GM+ T DK+ S+V+KW T+IEA++DVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.011e-71
Identity = 132/204 (64.71%), Postives = 165/204 (80.88%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMEL 231          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.725e-71
Identity = 132/204 (64.71%), Postives = 165/204 (80.88%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAPS F +R +GKT+VTRT GTKIAS+GLK RVFEVSL DL N+E  A+RK +L  E+VQG+N LTNF GMN TTDKLRSLV+KW TLIEA VDVKTTD + LR+FCIGFTKR  NQ+K+T YA+ +QI+ IR+KM +I+  + ++ DLK +V K I + IG++IEK+  SIYPL +V IRKVK+LK PKFD+GKLME+
Sbjct:   28 DWYDVKAPSMFNIRQIGKTVVTRTAGTKIASDGLKGRVFEVSLADLQNDEI-AFRKFKLMCEEVQGRNCLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEM 230          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.725e-71
Identity = 131/203 (64.53%), Postives = 162/203 (79.80%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 766
            +WYDIKAPS F  RN GKTLV RTQG K A++ LK RV E+SL DL N++E ++RKI+LR EDV GK+ LT+F+GM+FTTDKLRS+VRKW +L+EA+VDVKTTD + LRLF IGFTKR  NQVK+T YAQ+SQ+++IR KM EIM  +A   DLK LV+KF+ E IGREIEKA   IYPL NV++RK KI+K PK D+ KL+E
Sbjct:   28 EWYDIKAPSFFENRNAGKTLVNRTQGLKNANDSLKGRVLELSLADLNNDQEQSFRKIKLRVEDVAGKSCLTSFYGMDFTTDKLRSIVRKWQSLVEAHVDVKTTDGYVLRLFAIGFTKRQSNQVKKTTYAQSSQLKEIRAKMVEIMRREAEGSDLKELVQKFVPESIGREIEKAAKGIYPLHNVYVRKAKIVKTPKIDMSKLLE 230          
BLAST of CK933032 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.725e-71
Identity = 131/204 (64.22%), Postives = 164/204 (80.39%), Query Frame = 2
Query:  158 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 769
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL D  N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+ QIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADFQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKHNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKIPKFELGKLMEL 231          
The following BLAST results are available for this feature:
BLAST of CK933032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
RS3A_MAGGR4.538e-7266.3440S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_DANRE4.538e-7263.7340S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3A_SALSA5.927e-7263.2440S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_CHAGB5.927e-7267.3340S ribosomal protein S1 OS=Chaetomium globosum GN... [more]
RS3A_PENCW7.741e-7264.8540S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_OPHHA1.011e-7163.7340S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]
RS3AB_XENLA1.011e-7164.7140S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]
RS3A_NEMVE1.725e-7164.7140S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3A_CRYNE1.725e-7164.5340S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_CALJA1.725e-7164.2240S ribosomal protein S3a OS=Callithrix jacchus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004348_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933032 ID=CK933032; Name=CK933032; organism=Citrus sinensis; type=EST; length=770bp
GGGGCTCTTCACTCACAATGAACGAGCTAGGACTAGGTAGCAGCGGAGCC
GTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGG
ATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGC
CAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAA
ATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCA
GAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAA
TGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCC
AAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGAC
AAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGT
GGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGAT
TCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACC
AGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTC
back to top