CK933035

Overview
NameCK933035
Unique NameCK933035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3163 contig Csv1_Contig3163:69..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.911e-26
Identity = 75/199 (37.69%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  188 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKV 763
            + +G+TP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ AE  GL+ PG T+L E TSGNTGI LA  A  +GY+LI +MP   S+ERR +L   GA++  +    G    V   +E+    P+  +L Q+ NPAN + +Y  TGPE+  D   ++  F              RFL+E   N+K+
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKI 205          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.911e-26
Identity = 75/199 (37.69%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  188 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKV 763
            + +G+TP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ AE  GL+ PG T+L E TSGNTGI LA  A  +GY+LI +MP   S+ERR +L   GA++  +    G    V   +E+    P+  +L Q+ NPAN + +Y  TGPE+  D   ++  F              RFL+E   N+K+
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKI 205          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.965e-26
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 2
Query:  173 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT-VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-----GFEGFVKKGEEILNRTPNG---YILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEK 745
            K+ V ELIG+TP+V + ++       I AKLE+  P  S KDR+A ++IK AE+ G +  G+   + E TSG+TGI +A +  + GY+  I +P   S+E+  +L +LGA V    PA       +    KK    L ++ NG       QFEN AN +++Y+TTGPEI + + G +DAF              +FLKE+
Sbjct:   46 KEGVEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELKKSGNGIRAVFADQFENEANWKVHYQTTGPEIAHQTKGNIDAFIAGCGTGGTITGVAKFLKER 245          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.927e-24
Identity = 66/200 (33.00%), Postives = 98/200 (49.00%), Query Frame = 2
Query:  170 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIK 760
            I   + E +G+TP++ + ++ +     I  K E M P  S KDR+A  +I D E KGL+  G T+ +E T+G+TGI L  +  SRGY + + +P   S E+  +L  LGAE  +  P VG      F+    +        +   QF+N +N   +Y  T  EIW  + G VD F               +LKE NPNI+
Sbjct:   38 ISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKGSTI-VEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGMNNANHFMHCAYQRCLGDDMAFYANQFDNLSNFNAHYNGTAKEIWEQTKGDVDGFVAAAGTGGTVAGISSYLKEVNPNIQ 235          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.355e-15
Identity = 63/204 (30.88%), Postives = 99/204 (48.53%), Query Frame = 2
Query:  182 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY-----LADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTG--PEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            VT+LIG TP++ ++  V G  A +  K+E   P  S+KDR+A SM+  A   G + PG T+ +E +SGNTG GLA  A   G + I ++    + ++  ++RALGAE+        +  V      +   ++  + P    + Q +NPANPE Y   TG   E+       +DAF              + LK  NP ++   +
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEIRYVEGDFREDEVAVVERQRLAAQLGAQLPGALFMNQSDNPANPEGY---TGLVDELVAQLPDGIDAFVGCVGTGGSMTGISQRLKRNNPAVRTIAV 203          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSM_RALME (Cysteine synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=cysM PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 58/201 (28.86%), Postives = 91/201 (45.27%), Query Frame = 2
Query:  182 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA---EVYLADPAVGF-EGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            + E IG+TP+V L  +     A + AKLE++ P  SVKDR A  +++    +G I P   V IE +SGN  I LA I   +G +   ++    S     ILR  GA   +V   D   G+ E  +++  ++L    +   + Q+ NP N E +Y     EI        D                R L++  P+++V G+
Sbjct:    6 IIESIGNTPLVQLRRLFGRADAEVFAKLELLNPAGSVKDRPARYIVEKGLTEGAIGPHSHV-IESSSGNLAIALAMICGLKGLRFTAVVDPKISPTNLKILRCYGAGIEQVTAKDSQGGYLETRIERVRQMLREQRDAIWINQYANPLNWESHYYGEAAEILAQLAQPADVLVLGVSTSGTVHGIARRLRKAWPSMRVVGV 205          
The following BLAST results are available for this feature:
BLAST of CK933035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_MYCTU2.911e-2637.69Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO2.911e-2637.69Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSK_YEAST4.965e-2636.50Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK_DICDI7.927e-2433.00Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
Y4XP_RHISN1.355e-1530.88Putative cysteine synthase OS=Rhizobium sp. (strai... [more]
CYSM_RALME1.268e-1328.86Cysteine synthase OS=Ralstonia metallidurans (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933035 ID=CK933035; Name=CK933035; organism=Citrus sinensis; type=EST; length=780bp
GGGGGTGGATATGTATATATGTTTATCTTCAATGTCTGATGCATAATGTA
TTTCAGAGAAAAAATTACACCAGGAACTGGTATCTCCATTCAAACTGCCA
AGTGCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTC
CATGGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCC
ATACACCGATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGT
ATTGCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAG
AATTGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCC
CAGGGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGA
TTGGCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCC
ATCAACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTG
AGGTTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAG
GGTGAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACAATT
TGAAAATCCCGCGAATCCGGAGATTTATTACGAGACAACTGGCCCAGAGA
TATGGAACGACTCAGGAGGGAAGGTTGATGCTTTTATAGCAGGGATAGGA
ACTGGTGGTACTGTAACTGGTGCGGGGAGATTCCTTAAAGAAAAGAACCC
AAATATTAAGGTATATGGTATANNNNNATC
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