CK933081

Overview
NameCK933081
Unique NameCK933081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933081_ssr81 microsatellite CK933081_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURP0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1106a) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.912e-18
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            LAGL  A KDVF  +G+ +  GS      ++ +   A VV  L   G   +GKT +DEFA G + EN  +G   NP   S +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +AR+A+
Sbjct:   67 LAGLPIAHKDVFVTRGWRSTAGSK--MLANYASPFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAA 217
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_SULSO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfolobus solfataricus GN=gatA-2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 58/155 (37.42%), Postives = 79/155 (50.97%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 790
            LAG+  AIKD    +G  T   S     + +     A V+  L K GA  IGKT +DEFA G T E  ++G   NP      P               V+ ALG+DT G +R PA++  I G +PS+GTVS  G++  + SL+ +G +ARNA  L
Sbjct:   64 LAGVLIAIKDNISTEGIRTTCASK--MLEDYIPPYDATVIEKLKKEGAVIIGKTNMDEFAMGSTTETSYFGPTRNPWDLERTPGGSSGGSGAALAAGYVELALGSDTGGSIRAPAAYNAIFGLKPSYGTVSRFGLVAYANSLEQIGPMARNAEDL 216
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_SULAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfolobus acidocaldarius GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 59/162 (36.42%), Postives = 82/162 (50.62%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 811
            LAG+  AIKD     G  T   S     + +     A VV  L   GA  IGKT +DEFA G T E  ++G   NP      P              +V+ ALG+DT G +R PA+F G+ G +PS+GTVS  G++  + SL+ +G +A+NA  L  +  V+
Sbjct:   61 LAGVLIAIKDNISTLGIRTTCASRIL--EDYIPPYDATVVEKLKSEGAVIIGKTNMDEFAMGSTTETSYFGPTKNPWDLERTPGGSSGGSGAVLAGGIVELALGSDTGGSIRAPAAFNGVFGLKPSYGTVSRYGLIAYANSLEQIGPMAKNAEDLELLYDVI 220
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia sp. (strain 383) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            L GL  A KDVF  +G+ +  GS      ++E+   A VV  L   G   +GKT +DEFA G + EN  +G   NP   + +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +A++AS
Sbjct:   67 LTGLPIAHKDVFVTRGWHSTAGSK--MLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAS 217
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            L GL  A KDVF  +G+ +  GS      ++E+   A VV  L   G   +GKT +DEFA G + EN  +G   NP   + +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +A++AS
Sbjct:   67 LTGLPIAHKDVFVTRGWRSTAGSK--MLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAS 217
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURCM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            L GL  A KDVF  +G+ +  GS      ++E+   A VV  L   G   +GKT +DEFA G + EN  +G   NP   + +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +A++AS
Sbjct:   67 LTGLPIAHKDVFVTRGWRSTAGSK--MLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAS 217
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            L GL  A KDVF  +G+ +  GS      ++E+   A VV  L   G   +GKT +DEFA G + EN  +G   NP   + +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +A++AS
Sbjct:   67 LTGLPIAHKDVFVTRGWRSTAGSK--MLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAS 217
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain HI2424) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            L GL  A KDVF  +G+ +  GS      ++E+   A VV  L   G   +GKT +DEFA G + EN  +G   NP   + +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +A++AS
Sbjct:   67 LTGLPIAHKDVFVTRGWRSTAGSK--MLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAS 217
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURCC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain MC0-3) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            L GL  A KDVF  +G+ +  GS      ++E+   A VV  L   G   +GKT +DEFA G + EN  +G   NP   + +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +A++AS
Sbjct:   67 LTGLPIAHKDVFVTRGWRSTAGSK--MLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAS 217
[Close]
BLAST of CK933081 vs. ExPASy Swiss-Prot
Match: GATA_BURCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain AU 1054) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 2 
Query:  326 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGYVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 784
            L GL  A KDVF  +G+ +  GS      ++E+   A VV  L   G   +GKT +DEFA G + EN  +G   NP   + +P             +L   A GTDT G +R PASF G+ G +P++G VS  G++  + SLD  G +A++AS
Sbjct:   67 LTGLPIAHKDVFVTRGWRSTAGSK--MLANYESPFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAS 217
The following BLAST results are available for this feature:
BLAST of CK933081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BURP01.912e-1837.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_SULSO2.498e-1837.42Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SULAC2.498e-1836.42Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_BURS32.498e-1837.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM12.498e-1837.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCM2.498e-1837.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCJ2.498e-1837.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCH2.498e-1837.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCC2.498e-1837.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCA2.498e-1837.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_A02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933081 ID=CK933081; Name=CK933081; organism=Citrus sinensis; type=EST; length=829bp
GCGGGGGCAGTCGATCGCCATTAAAACTANNNACGAAAACCTCCCTTAAA
CCCTTCACCTTTTCACATACCGTTTGTGTGTTATTATTATTATTTTTTCA
AATCGAACCATGTCAAAATCATTTAATATAATTAAAACCAATACATCGAA
CCCCAAAGTTTGGGTAGTGATCGGGGTGAGCGTGGTGGGTTTCGTGGTTC
TTGCGGAGACTCTGCGCCGTAGAAGGAATCTCAAATTGAATGGGAGAGTC
GATTTTGGTGCTTTTTTGGAAAGATTTGAACTCATTCCGTTCCCTCAGCC
GCCGCCTCCTGCTGCTCGGCAGCCTCTCGCCGGCCTCAAATTCGCCATCA
AGGACGTTTTTGATGTGAAGGGGTATGTAACGGGGTTTGGGAGTCCAGAC
TGGAAGAGAGATCACCATGAAGCCGAGAGGACGGCCGTGGTCGTTACTCT
TTTGTTGAAGAATGGAGCTACTTGTATTGGCAAGACTGTTTTAGATGAAT
TTGCATTTGGGATTACTGGGGAGAACAAGCATTATGGAACCCCTGTTAAT
CCCCAAATGCCCTCTCATATTCCTGGAGGTTCTTCTAGTGGTTCAGCTGT
GGCTGTTGCAGCTCAGCTTGTTGACTTTGCTCTTGGTACTGATACAATTG
GCTATGTGAGAGTTCCAGCATCATTTTGTGGGATCCTTGGTTACCGACCG
TCTCATGGCACTGTTTCCATGATTGGCGTGCTGCCAAATTCACAATCTCT
AGACACTGTTGGTTTGCTTGCTCGTAATGCATCTATTTTACATCGTGTTG
GGCATGTTTTACTTCAACTAAACACGGTG
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