CK933087

Overview
NameCK933087
Unique NameCK933087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2138 contig Csv1_Contig2138:6..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.508e-59
Identity = 107/213 (50.23%), Postives = 149/213 (69.95%), Query Frame = 1
Query:  151 FYQDFDLTWGDKRAKIFNGG---QLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSS-QGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC--NNCGXKWSSS 771
            FY+ FD+       ++ +     Q ++L+LDR SGSGF SK  YLFG   +Q+KLV G+SAGTVT++YLSS +G  HDEID EF+GN+SG PY+++TN++A G G +E QFYLWFDPT +FHTY +IW PQ++IF VD++P+R FK  + L   +P+++PM+++++LW+   WATR G VK DW+ APF   YR +    C  NN    WSSS
Sbjct:   28 FYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLA--YPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNACVNNNPAGGWSSS 238          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.540e-56
Identity = 96/198 (48.48%), Postives = 142/198 (71.72%), Query Frame = 1
Query:  151 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 744
            F Q++ +TWG       + G+ + L +D+ SG GF+SK  Y  G  +M++K+ +G++ G VTA+YL+S+G  HDEIDFEFLGN +G+P  L TN+F  G+GNRE++F LWF+PT+++HTY ++W P  ++F VDNIPIRV+KN    GV +P ++PM++ +SLWN DDWAT GG  K +W+ +PF A++R+F    CN
Sbjct:   35 FGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKNEN--GVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCN 229          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.943e-55
Identity = 100/199 (50.25%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  160 DFDL----TWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 744
            DFD+    TWG       N G+ + LS+D  SGSGF+SK  Y  G   M++KL   DSAG VTA+YL+S+G THDE+DFEFLGN  G+P  + TN+F+ G+G REQ+F  WFDPT +FHTY ++W P  ++F VD +PIRVFKN +  GV +P ++PM++ +SLWN ++WAT GG  K +W  APF A Y+ F    C+
Sbjct:   31 DFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCH 228          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.698e-53
Identity = 97/207 (46.86%), Postives = 138/207 (66.67%), Query Frame = 1
Query:  151 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC------NNCG 753
            F  ++ +TWG       N G+ + LSLD  SGSGF+SK  Y  G   +++K+   D++G VTA+YL+S+G THDE+DFEFLGN  G+   + TN+F  GKGNREQ+  LWFDP+++FHTY+++W P  ++  VDNIP+RVFKN  S G+ +P ++PM++  SLWN ++WAT GG  K +W+ APF A ++ F    C      N CG
Sbjct:   39 FDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGCFTNAEKNACG 243          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.820e-43
Identity = 86/205 (41.95%), Postives = 124/205 (60.49%), Query Frame = 1
Query:  151 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPT---HDEIDFEFLGNVSGQPYILHTNIFAQGKGN-----REQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 741
            FY+ F   WG +  ++      L++ LDR SGSGF+S + +  G     +KL  G +AG +T+ YLS+       HDE+D EFLG   G+PY L TN++ +G G+     RE +F LWFDPT++FH Y+++W P+ +IFLVD+IPIR +    +   P    +PM +Y S+W+A  WAT  G  K D+   PFTA Y NF+A+ C
Sbjct:   43 FYKGFRNLWGPQHQRMDQNA--LTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGC 242          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.419e-41
Identity = 82/205 (40.00%), Postives = 120/205 (58.54%), Query Frame = 1
Query:  151 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGP---THDEIDFEFLGNVSGQPYILHTNIFAQGKGNR-----EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 741
            F ++F   WG +  +      +++L LD+ +GSGF+S R Y  G     +KL  G +AG  T+ YLS+       HDE+D EFLG   G+PY L TN+F +G G+R     E +F LWFDPT++FH Y+++W P  ++F VD++PIR +        P    +PM +Y S+W+A DWAT  G +K D+   PF A Y+NF+   C
Sbjct:   39 FDREFRTLWGSQHQR--REQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFP---TRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGC 238          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.327e-39
Identity = 81/194 (41.75%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  151 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGN--REQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYY 717
            F + +   +GD+   +   G+ + L+LD  +GSGF S   YL G     +KL A  SAG V A+YLS+       HDEIDFEFLGN+ G+ + + TNI+  G  +  RE+++ LWFDPT +FH YS++W   H+IF VDN+PIR  K   S+G  FP  +PM +YS++W+   WAT GG    ++  AP+ + +
Sbjct:   31 FDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQF 223          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.467e-38
Identity = 77/194 (39.69%), Postives = 116/194 (59.79%), Query Frame = 1
Query:  151 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGK--GNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYY 717
            F + +   +GDK   +   G+ + L+LD  +GSGF S   YL G     +KL +  +AG V A+Y+S+       HDEIDFEFLGN+  + + + TNI+  G     RE+++ LWFDPT +FH YS++W   H+IF VDN+PIR  K    +G  FP ++PM +Y+++W+   WAT GG    ++  AP+ A +
Sbjct:   31 FEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARF 223          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.576e-38
Identity = 75/179 (41.90%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  223 LSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR--EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 744
            L LDR +GSGF S   Y  G     +KL A  +AG V A+Y S+      THDE+D EFLGN+ G+P+   TN++  G  +R  E+++ LWFDP++ FH YS++W P  +IF VD++PIR     +++G  +P  +PM +Y+++W+A DWAT GG  K ++  APF A +++F    C+
Sbjct:   56 LLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCS 233          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 74/184 (40.22%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  208 GQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGP---THDEIDFEFLGNVSGQPYILHTNIFAQG--KGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 744
            G L  L+LD+ SG+G  SK  Y +G    +LKL AG ++G V A+YLS+      +HDEID E LG      + + TN++A G  +  RE++FY WFDPT+ FH Y++IW   H +FLVDNIP+R F N  +    +P ++PM +Y ++W+  +WAT+GG    ++  APF     +     C+
Sbjct:   60 GSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCS 242          
The following BLAST results are available for this feature:
BLAST of CK933087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
XTH8_ORYSJ1.508e-5950.23Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH3_ARATH4.540e-5648.48Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH2_ARATH2.943e-5550.25Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH4.698e-5346.86Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH9.820e-4341.95Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH2.419e-4140.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH1.327e-3941.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.467e-3839.69Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH5.576e-3841.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH1.794e-3640.22Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004347_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933087 ID=CK933087; Name=CK933087; organism=Citrus sinensis; type=EST; length=772bp
GGGGAAGGTTTTCAACCATACAGCTTCTCTCTCTTGTTGTGTTATAANNN
NNNCAGCAAATTAAGAACTATGGGTTATCATTATTCTTGTAATGGGTTGT
TGTTATTGGTGAGTGTTTTGATGGTTGTTGCCTCATCAGCTGTGGGTAGC
TTCTATCAAGACTTTGATTTAACATGGGGTGATAAGAGAGCTAAGATTTT
CAATGGCGGCCAACTTCTTTCTCTGTCTCTAGACAGAGTTTCTGGCTCTG
GTTTTCAGTCCAAGAGAGACTACTTATTTGGCAGAATTGATATGCAGCTC
AAGCTTGTTGCTGGTGACTCTGCTGGCACTGTCACTGCCTACTATCTGTC
TTCGCAAGGGCCGACTCATGATGAGATTGATTTTGAGTTCTTGGGAAATG
TGAGCGGTCAGCCTTACATTCTTCACACAAATATATTCGCTCAGGGTAAA
GGCAACCGGGAGCAACAATTCTATCTCTGGTTTGATCCCACAAGAAACTT
CCACACTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTCTTGGTAG
ATAACATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGGAGTTCCC
TTCCCTAAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGAATGCTGA
TGACTGGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACTAAGGCTC
CTTTCACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAACAACTGT
GGNNCTAAATGGTCATCAAGCT
back to top