CK933087

Overview
NameCK933087
Unique NameCK933087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.383e-35
Identity = 71/179 (39.66%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  223 LSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR--EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 744
            L LD+ +GSGF S   Y  G     +KL    +AG V A+Y S+       HDE+D EFLGN+ G+P+   TN++  G  NR  E+++ LWFDP++ FH YS++W P  +IF VD++PIR     E +   +P+ +PM +Y+++W+A  WAT GG    D+T +PF + +++     CN
Sbjct:   64 LLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCN 241          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.589e-30
Identity = 64/158 (40.51%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  172 TWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWN 645
            TWG + A + N    L L+LD+ SGSGF+S+  Y  G  ++++K     S G +T++YL S+   HDE+ F+ LG  +G PY+L+TN++  G+G ++Q+F LWFDPT+++H+YS +W P  ++F VD+ PIRV+  +++  V +P  Q M +  S+ N
Sbjct:   31 TWGHQ-ALVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGK-NGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVY--SKNPDVYYPSVQTMFLMGSVQN 184          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 51/176 (28.98%), Postives = 86/176 (48.86%), Query Frame = 1
Query:  163 FDLTWGDKRAKIFNGGQL----LSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWN---ADDW 657
            F+ TW        N G+L     S + ++   + ++S   Y +G  ++ +K     + G V++++  + GP H    DEID EFLG  + +   +  N +  G G  E+   L FD ++ FHTY+  W+P ++ + VD     V K+  +  +P   + P KI  +LWN    DDW
Sbjct:   53 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 215          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 54/179 (30.17%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  157 QDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGF-----QSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWN---ADDW 657
            Q F+ TW        N G+L  LSL   + + F     +S  +Y +G  ++ +K     + G V++++  + GP+H    DEID EFLG  + +   +  N +  G G  E+   L FD + +FHTY+  W+P ++ + VD     V K+  +  +P   + P KI  +LWN    D W
Sbjct:   52 QMFNCTWRANNVNFTNDGKL-KLSLTSPANNKFDCGEYRSTNNYGYGLYEVSMK--PAKNTGIVSSFFTYT-GPSHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDG----VLKHTATTNIP---STPGKIMMNLWNGTGVDSW 216          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12
Identity = 62/220 (28.18%), Postives = 98/220 (44.55%), Query Frame = 1
Query:  157 QDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGN--REQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPK-----NQPMKIYSSLW---------NADDWATRGGLVKTDWTKAP-------FTAYYRNFRAIPCNN 747
            +DFD T     +   + G ++     + +GS   S R +L+G+  +++K     S G VTA+ L+S     DEIDFE+LG   G      +N ++QG  +  R Q+F +  D    +HTY + W P  +I+ VD    R     ++   P  K       PM++  ++W            +WA  GGL+  DW  +P       FTA+       P  N
Sbjct:  149 EDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDLTSA--IGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWD-PISKEYRYPQTPMRLEIAVWPGGSETNGPGTINWA--GGLI--DWENSPDIIEKGQFTAHVEQITVTPYQN 356          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 1
Query:  175 WGDKRAKIFNGGQLLSLSLD-------------RVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHD----EIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKA-----PFTAYYR 720
            W  KR  + N G  L LS+D             R SG  F++   Y +G  +  ++ +  D  G V++++  + GP+ D    EID E LG  + Q   +  N +  G+G  E+ + L FD +  +HTY   W+P ++ + VD     V++  + +    PK  P KI  + W         GL   DW KA     P TA+Y+
Sbjct:  601 WWYKRNAVINDG-CLQLSIDQKWTNDKNPDWDPRYSGGEFRTNNFYHYGYYECSMQAMKND--GVVSSFFTYT-GPSDDNPWDEIDIEILGKNTTQ---VQFNYYTNGQGKHEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDG--REVYRATQDI----PKT-PGKIMMNAW--------PGLTVDDWLKAFNGRTPLTAHYQ 782          
BLAST of CK933087 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 52/176 (29.55%), Postives = 82/176 (46.59%), Query Frame = 1
Query:  163 FDLTWGDKRAKIFNGGQLLSLSLDRVSGSGF-----QSKRDYLFGRIDMQLKLVAGDSAGTVTAYYL---SSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWN---ADDW 657
            F+  W     K  NG   L L++DR  GSG+     ++K  Y +G   + +K +   + G V++++     S G   DEID EFLG  + +   +  N +  G+G+ E   YL FD ++ FHTY   W    + + VD   +    +     +P   + P KI  + WN    DDW
Sbjct:   61 FNCRWTPNNDKFENGK--LKLTIDR-DGSGYTCGEYRTKNYYGYGMFQVNMKPIK--NPGVVSSFFTYTGPSDGTKWDEIDIEFLGYDTTK---VQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAVYTAYD----NIP---DTPGKIMMNAWNGIGVDDW 221          
The following BLAST results are available for this feature:
BLAST of CK933087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
XTH29_ARATH3.383e-3539.66Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH5.589e-3040.51Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_PAEMA1.806e-1228.98Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_PAEPO4.024e-1230.17Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
CRR1_YEAST5.255e-1228.18Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
XYND_RUMFL1.997e-1128.92Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
GUB_ORPSP5.811e-1129.55Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933087 ID=CK933087; Name=CK933087; organism=Citrus sinensis; type=EST; length=772bp
GGGGAAGGTTTTCAACCATACAGCTTCTCTCTCTTGTTGTGTTATAANNN
NNNCAGCAAATTAAGAACTATGGGTTATCATTATTCTTGTAATGGGTTGT
TGTTATTGGTGAGTGTTTTGATGGTTGTTGCCTCATCAGCTGTGGGTAGC
TTCTATCAAGACTTTGATTTAACATGGGGTGATAAGAGAGCTAAGATTTT
CAATGGCGGCCAACTTCTTTCTCTGTCTCTAGACAGAGTTTCTGGCTCTG
GTTTTCAGTCCAAGAGAGACTACTTATTTGGCAGAATTGATATGCAGCTC
AAGCTTGTTGCTGGTGACTCTGCTGGCACTGTCACTGCCTACTATCTGTC
TTCGCAAGGGCCGACTCATGATGAGATTGATTTTGAGTTCTTGGGAAATG
TGAGCGGTCAGCCTTACATTCTTCACACAAATATATTCGCTCAGGGTAAA
GGCAACCGGGAGCAACAATTCTATCTCTGGTTTGATCCCACAAGAAACTT
CCACACTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTCTTGGTAG
ATAACATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGGAGTTCCC
TTCCCTAAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGAATGCTGA
TGACTGGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACTAAGGCTC
CTTTCACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAACAACTGT
GGNNCTAAATGGTCATCAAGCT
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