CK933088

Overview
NameCK933088
Unique NameCK933088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACTC_STRPU (Actin, cytoskeletal 2A OS=Strongylocentrotus purpuratus GN=CYIIA PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 DDVAALVVDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACTC_PISOC (Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 192/201 (95.52%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACTC_HALRO (Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=3 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 192/201 (95.52%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACTB_XENBO (Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb PE=3 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 190/205 (92.68%), Postives = 196/205 (95.61%), Query Frame = 2 
Query:  131 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            MAD +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    1 MAD-DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACT5C_ANOGA (Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACT3_BOMMO (Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
[Close]
BLAST of CK933088 vs. ExPASy Swiss-Prot
Match: ACT2_STRFN (Actin-15B OS=Strongylocentrotus franciscanus PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 2 
Query:  143 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT 745
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTT
Sbjct:    4 DDVAALVIDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 204
The following BLAST results are available for this feature:
BLAST of CK933088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ACTC_STRPU1.193e-10693.53Actin, cytoskeletal 2A OS=Strongylocentrotus purpu... [more]
ACTC_PISOC1.193e-10693.53Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1[more]
ACTC_HALRO1.193e-10693.53Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=... [more]
ACTB_XENBO1.193e-10692.68Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb P... [more]
ACT5C_ANOGA1.193e-10693.53Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1[more]
ACT4_BOMMO1.193e-10693.53Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV... [more]
ACT3_BOMMO1.193e-10693.53Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3[more]
ACT3B_HELAM1.193e-10693.53Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=... [more]
ACT3A_HELAM1.193e-10693.53Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACT2_STRFN1.193e-10693.53Actin-15B OS=Strongylocentrotus franciscanus PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933088 ID=CK933088; Name=CK933088; organism=Citrus sinensis; type=EST; length=746bp
GGGGTCACTACTACACTTTTAATCTCTCGGCAGTACCAAATACAGAGNNN
TAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATTTTTCTCTC
GTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGATAT
TCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTG
CTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTGGTAGGCCT
CGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTGG
TGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAATTG
AGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCAT
ACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCT
CACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAAA
TTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGCT
GTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTC
TGGTGATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTTC
CTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCA
TTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAG
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