CK933090

Overview
NameCK933090
Unique NameCK933090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.198e-27
Identity = 63/163 (38.65%), Postives = 100/163 (61.35%), Query Frame = 2
Query:  104 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 589
            NPM E+++ K+ LNI VGE G++L RA ++LE++SGQ PV + ++ T   FGIR+ + IAC VT+RG++A ++L+  L+     L    F + G    GI EHID+ G+KYDP  GI+GM+  V  E                  +HRV++E+A+++ + K++
Sbjct:    2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.395e-27
Identity = 62/162 (38.27%), Postives = 97/162 (59.88%), Query Frame = 2
Query:  104 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 586
            NP R + V K+V+++ VGE+GD+L  A +++ +++G TPV S A+ T+ +FGIR+   I+C VT+RG+ A + LE+ +K+ E ++  R F   G F FGI+EH D  G  YDP  GI+G+D  VVL+                 ++  VT EDA  + + +Y
Sbjct:    2 NPNRSVAVDKVVVHMGVGEAGDKLVNAERIISEITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METM7 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 68/171 (39.77%), Postives = 98/171 (57.31%), Query Frame = 2
Query:  107 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 607
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    S  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.425e-26
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 2
Query:  107 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 607
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  107 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 586
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  107 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 586
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 65/171 (38.01%), Postives = 99/171 (57.89%), Query Frame = 2
Query:  107 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 607
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  ++GIR+   I   VT+RG  A + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  +                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKITVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRVKSRKLKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 2
Query:   98 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 586
            +SNPMR   V+K+++++ VGESG  L  A ++L+ ++GQ  V   A+ T+ +F I++NE I C VT+RG +A + L +  ++ E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:    1 MSNPMRTPMVEKVIVHMGVGESGQHLVNAEEILKTITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIATRKIPTDHRVTVDDAIAFLNESY 164          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 62/164 (37.80%), Postives = 94/164 (57.32%), Query Frame = 2
Query:   98 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 586
            +SN MR   V+K+++++ VGESG  L  A ++L  ++GQ  V   A+ T+ +F I++NE I C VT+RG +A Q LE+ L + +  L+R  F   G   FGI+EH D  G+KYDP+ G++GMD  VV++                   HRVT ED++ +    Y
Sbjct:    1 MSNVMRTPVVEKVIVHMGVGESGQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPGERICKRRIATRKIPTNHRVTLEDSIAFLNDSY 164          
BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  104 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 577
            NPM E+++ K  ++I VGE+G++L+RA  +LEQ+  QTPV + ++ T   FGIR+ + IAC +T+RG+KA + +E  L+     +    F   G   FGI+EHID+ G+KY+P  GI+GM+  V  E                  +HR++KE+ MK+ +
Sbjct:    2 NPMNEVQISKATVSIGVGEAGEKLSRAITLLEQMFDQTPVKTFSKVTNPEFGIRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGYRIAKRRIQQKKVPAKHRISKEETMKYME 160          
The following BLAST results are available for this feature:
BLAST of CK933090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL5_METTH2.198e-2738.6550S ribosomal protein L5P OS=Methanobacterium ther... [more]
RL5_METHJ6.395e-2738.2750S ribosomal protein L5P OS=Methanospirillum hung... [more]
RL5_METM71.091e-2639.7750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METM61.425e-2639.1850S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METVS4.145e-2640.8550S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METVA4.145e-2640.8550S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METM54.145e-2638.0150S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METMA7.070e-2637.2050S ribosomal protein L5P OS=Methanosarcina mazei ... [more]
RL5_METBF7.070e-2637.8050S ribosomal protein L5P OS=Methanosarcina barker... [more]
RL5_METS31.575e-2537.7450S ribosomal protein L5P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_H02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933090 ID=CK933090; Name=CK933090; organism=Citrus sinensis; type=EST; length=819bp
GGGGACTCTTACATATTATGGTTTGTTCCGTCTNNNTCTTCACTGAGCAG
CGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAACTT
TCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATCTC
CGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGC
AACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGG
TCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTTAG
AGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAAT
ATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTGGCTTTGGT
ATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGAAT
TTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAG
GTCGACGCCGTAGGTGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACG
AAGGAAGATGCAATGAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCT
CAACAAGTCCCAGAATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTT
TGCATTTATAGTGTTGATGTTTGTAGACACTGGCTATTACTTGGCGTTTT
GCAAACCTGAGTTAGATGCTTTTGGTAGTTCAAGATATCTTGTTATTTGT
CTATTTAAATTTTATTATCAAGATTATGGCTTAGCTGCACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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