CK933090

Overview
NameCK933090
Unique NameCK933090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK933090 vs. ExPASy Swiss-Prot
Match: RL5_AQUAE (50S ribosomal protein L5 OS=Aquifex aeolicus GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 2 
Query:  104 NPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 472
            +PM+  ++QK+V+N+ VGE+     +L RA + L  ++GQ PV ++AR +   F +R+   I C VT+R ++    L+  +     +VK+++ L  R+F   G + FGI E I    I YD    I GMD  +
Sbjct:   32 SPMQIPRLQKIVVNMGVGEAVQDIRQLERAVEDLRAITGQQPVITRARKSEAGFKLRKGMPIGCKVTLRKERMWDFLDKLISVALPRVKDFKGLSPRSFDGRGNYAFGIAEQIVFPEIDYDKVDRIRGMDIII 164
The following BLAST results are available for this feature:
BLAST of CK933090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL5_AQUAE8.390e-1133.8350S ribosomal protein L5 OS=Aquifex aeolicus GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_H02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933090 ID=CK933090; Name=CK933090; organism=Citrus sinensis; type=EST; length=819bp
GGGGACTCTTACATATTATGGTTTGTTCCGTCTNNNTCTTCACTGAGCAG
CGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAACTT
TCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATCTC
CGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGC
AACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGG
TCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTTAG
AGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAAT
ATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTGGCTTTGGT
ATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGAAT
TTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAG
GTCGACGCCGTAGGTGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACG
AAGGAAGATGCAATGAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCT
CAACAAGTCCCAGAATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTT
TGCATTTATAGTGTTGATGTTTGTAGACACTGGCTATTACTTGGCGTTTT
GCAAACCTGAGTTAGATGCTTTTGGTAGTTCAAGATATCTTGTTATTTGT
CTATTTAAATTTTATTATCAAGATTATGGCTTAGCTGCACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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