CK933098

Overview
NameCK933098
Unique NameCK933098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  242 KDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            KDRH KV GRGRRVR+PPLCAARI+QLT+ELGH+SDGET+EWLL+ AEPSI+
Sbjct:   69 KDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSIL 120          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 52/87 (59.77%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  137 PKSQPQLSNTYNY*VSSQN*TRHPRKRXXXXXXXTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            P   P LS       SS   T  PR+        + DRH+KV GRGRRVR+P + AAR+FQLTRELGHR+DGETIEWLLRQAEPSII
Sbjct:   24 PNPNPDLSIAAAEPPSSDGAT--PRRVRPRKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSII 108          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            +KDRH KV+GRGRR+RMP +CAAR+FQLTREL H+SDGETIEWLL+QAEP+II
Sbjct:   55 SKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAII 107          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  242 KDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            +DRHTKV GRGRR+RMP  CAARIFQLTRELGH+SDGETI WLL+Q+EP+II
Sbjct:   76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAII 127          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  242 KDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            +DRHTKV GRGRR+RMP  CAARIFQLTRELGH+SDGETI WLL+Q+EP+II
Sbjct:   76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAII 127          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 2
Query:  239 TKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSII 397
            +KDRHTKV GRGRR+RMP  CAAR+FQLTRELGH+SDGETI WLL +AEP+II
Sbjct:   57 SKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAII 109          
BLAST of CK933098 vs. ExPASy Swiss-Prot
Match: TCP16_ARATH (Transcription factor TCP16 OS=Arabidopsis thaliana GN=TCP16 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  242 KDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSI 394
            KDRH K+ GR RR+R+PP  A ++F+LT+ELG ++DGET+ WLL+ AEP+I
Sbjct:   18 KDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAI 68          
The following BLAST results are available for this feature:
BLAST of CK933098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP6_ARATH2.392e-1980.77Transcription factor TCP6 OS=Arabidopsis thaliana ... [more]
PCF1_ORYSJ3.124e-1959.77Transcription factor PCF1 OS=Oryza sativa subsp. j... [more]
TCP23_ARATH5.330e-1979.25Transcription factor TCP23 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ6.961e-1980.77Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI6.961e-1980.77Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
TCP19_ARATH1.187e-1879.25Transcription factor TCP19 OS=Arabidopsis thaliana... [more]
TCP16_ARATH1.661e-1258.82Transcription factor TCP16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933098 ID=CK933098; Name=CK933098; organism=Citrus sinensis; type=EST; length=734bp
GCGGGGGTCTCCACAAACCCTTTATCCTCNNNTGTAATTTCTCAAAAAAC
CCTCAATTTCTTTTTCTTTTTTAACCTTTTTTAAACCCCTGAAACAAAAC
TATCTACATGGCCTCAGAAATGGCATTGCAGACCCACCAAAATCCCAACC
CCAACTCAGTAACACCTACAACTACTGAGTCAGCAGCCAAAACTGAACTC
GCCACCCACGAAAACGTAGCAGTTCTTCGTCATCATCGACGAAGGACCGT
CACACCAAGGTCAACGGCCGGGGCCGCCGTGTACGGATGCCGCCTCTCTG
CGCGGCCCGGATCTTCCAGCTGACGAGGGAGCTCGGCCACCGATCAGACG
GCGAGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCCTCCATCATAGCC
GCAACCGGCACAGGCACCGTTCCCGCTGTGGCTGTATCCTCATCCACCGC
GGGGCCCACTCCCATGTCGTCGTCCCCGCCTTCGTTGTCGTGCTGCGTGC
AGCCTCTGAGCGTTTCGTCGCAGGGGATGTTCTTGGCTGCTGACGCGGAG
CCGCAGCCCAACTGCCGTCTCGACTTGTGCCAGCCGTTGGGGCTGCAGTT
CGCGGGAAATGGGTACCGCCACATACCGTTCACAGCGCTGTTACTGCAGC
CGGCAGTTGCGGCTGTGGCCGCCGCGGCGGAGGAGGCGGAAGAGAGTGGG
GGGCAAGAGGATATCAAGGTGACTGGGGATTGTC
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