CK933104

Overview
NameCK933104
Unique NameCK933104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.748e-53
Identity = 102/226 (45.13%), Postives = 140/226 (61.95%), Query Frame = 3
Query:  132 IFSLFVGLLMVVLVSS-----------AKFDDLYQTSWAFDHVQ--YDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDAC 770
            IFS+FV  L ++ V +             F   Y  +W   HV   + G+ + L +D  SG GF SK  Y  G   ++IK+  G++ G VTAFY++S G  H+E DFEFLGN  G+P  +QTN+++NG GNRE+R  LWF+PTK +HTY LLWN  Q+VF VD  PIRV+ N    G+ +P  + M V +S+WN DDWAT GGR K +WS++PFIA ++ F +  C
Sbjct:    6 IFSVFVVTLWIIRVDARVFGGRGIEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGC 228          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.949e-52
Identity = 98/222 (44.14%), Postives = 149/222 (67.12%), Query Frame = 3
Query:  123 MSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQY---DGDT--LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS-DGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDAC 770
            +S+  ++ V  L     ++A F + +    A DHV+    DG T  + L LD  SG+GF SK  YLFG+ S+Q+KLVGG+SAGTVT+FY+SS +G  H+E D EF+GN +G PY++ TNV+ NG G +E +  LWFDPT +FHTY ++WN + ++F VD+ P+R  T  ++  + +P+ + M +++++W+   WAT+ G VK DWS APF+ SY+G+  +AC
Sbjct:    7 LSVAAAVAVSWLAASSAAAAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVR--TFKKYDDLAYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNAC 226          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.406e-52
Identity = 99/218 (45.41%), Postives = 138/218 (63.30%), Query Frame = 3
Query:  123 MSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDAC 770
            +S++F +F          +  FD  Y  +W  DH+     G  ++L++D  SG+GF SKS Y  G   ++IKL   DSAG VTAFY++S G  H+E DFEFLGN  G+P  +QTNV+ NG G REQ+   WFDPT  FHTY +LWN  Q+VF VD+ PIRV  N++  G+ +P  + M + +S+WN ++WAT GG+ K +W++APF A Y+GF    C
Sbjct:   11 VSVLFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGC 227          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.182e-49
Identity = 97/201 (48.26%), Postives = 135/201 (67.16%), Query Frame = 3
Query:  174 SSAKFDDLYQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDAC 770
            S   FDD Y  +W  ++V     G  ++L+LD+ SG+GF SK+ Y  G   I+IK+   D++G VTAFY++S G  H+E DFEFLGN  G+   VQTNV+ NG GNREQ+L LWFDP+K+FHTY++LWN  Q+V  VD  P+RV  N   +G+ +P  + M V  S+WN ++WAT GG+ K +WS APF A+++GF+   C
Sbjct:   35 SKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGC 233          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.551e-44
Identity = 92/213 (43.19%), Postives = 132/213 (61.97%), Query Frame = 3
Query:  171 VSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR-----EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPAS 785
            V ++ FD  ++T W   H + + D + L LD  +G+GF S   Y  G     IKL  G +AG  T+ Y+S++  +   H+E D EFLG T G+PY +QTNV+V G G+R     E +  LWFDPT++FH Y++LWN  Q+VF VD+ PIR + N +++ I FP  + M VY SIW+A DWAT+ GR+K D+ + PF+A YK F +  C   +S
Sbjct:   34 VPTSPFDREFRTLWGSQHQRREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY-NRKNEAI-FP-TRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTADSS 243          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.021e-41
Identity = 91/225 (40.44%), Postives = 131/225 (58.22%), Query Frame = 3
Query:  141 LFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGD----------TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDAC 770
            +F+ +L + L SS+ F +L   S+        GD          +++L LD Y+G+GF S + Y  G  S  IKL    +AG V AFY S+       H+E D EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     +  G  +P  + M +Y++IW+A DWAT GG+ K ++  APF+A +K F +D C
Sbjct:    9 IFILILCLCLRSSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGC 232          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.310e-40
Identity = 84/195 (43.08%), Postives = 119/195 (61.03%), Query Frame = 3
Query:  234 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADN 803
            D  +++L LD Y+G+GF S S Y  G  S  IKL G  +AG V AFY S+      +H+E D EFLGN  G+P+  QTN+Y NG  NR  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     E     +P+ + M +Y++IW+A  WAT GG+   D++ +PF++ +K   +D C    S  G +N
Sbjct:   58 DDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENN 251          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.503e-40
Identity = 84/213 (39.44%), Postives = 121/213 (56.81%), Query Frame = 3
Query:  171 VSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPAS 785
            V S  F   ++  W   H + D + L + LD  SG+GF S   +  G     IKL  G +AG +T+ Y+S++  +   H+E D EFLG T G+PY +QTNVY+ G G+     RE +  LWFDPTK+FH Y++LW+ R+++FLVD+ PIR +        P    + M +Y SIW+A  WAT+ G+ K D+ + PF A Y  F    C   +S
Sbjct:   38 VGSLNFYKGFRNLWGPQHQRMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCTAYSS 247          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.449e-39
Identity = 87/230 (37.83%), Postives = 131/230 (56.96%), Query Frame = 3
Query:  111 SMAKMSLIFSLFVGLLMVVLVSS---AKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGV--GNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDAC 770
            +++++ +  SLF GL+    + +     F++ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    +AG V AFYMS+      NH+E DFEFLGN   + + VQTN+Y NG     RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +Y++IW+   WAT GG+   ++ +AP+IA +    +  C
Sbjct:    3 TLSRLLVFMSLFSGLVSGFALQNLPITSFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGC 231          
BLAST of CK933104 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.505e-39
Identity = 89/223 (39.91%), Postives = 127/223 (56.95%), Query Frame = 3
Query:  123 MSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDAC 770
            MSL  SL  G  +  L    +FD+ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    SAG V AFY+S+      NH+E DFEFLGN  G  + +QTN+Y NG  +  RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +YS+IW+   WAT GG+   ++ +AP+++ +    +  C
Sbjct:   11 MSLFTSLVSGFALQKL-PLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGC 231          
The following BLAST results are available for this feature:
BLAST of CK933104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XTH3_ARATH8.748e-5345.13Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ORYSJ1.949e-5244.14Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH2_ARATH7.406e-5245.41Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH1.182e-4948.26Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH2.551e-4443.19Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH2.021e-4140.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.310e-4043.08Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH6.503e-4039.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.449e-3937.83Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH5.505e-3939.91Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_F04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933104 ID=CK933104; Name=CK933104; organism=Citrus sinensis; type=EST; length=814bp
GCGGGGACAGATCAGCATCTTATAAGTAGAANNNTCAACTTCCCTCCACN
NNNNNNGGCTTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTG
TCTTCATTCTTCAATGGCTAAAATGTCTTTGATTTTCAGTCTGTTTGTGG
GTCTTTTAATGGTGGTTTTGGTCAGCTCAGCTAAGTTTGATGATCTTTAT
CAAACAAGCTGGGCTTTTGATCATGTTCAGTATGATGGGGACACTCTCAA
GCTTAACCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGT
ATTTGTTTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCT
GCTGGAACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAA
CGAGTTCGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAG
TCCAAACCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTT
GACCTCTGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTG
GAACCAGCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGC
ACACTAACTTGGAGCACAAAGGAATTCCCTTTCCAAAGGACCAAGCCATG
GGTGTGTACAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGG
AAGGGTCAAGACTGACTGGAGCCATGCACCTTTTATTGCATCATACAAGG
GCTTTGATATTGATGCATGCGAGTGCCCAGCGTCGGTTGCAGGTGCCGAT
AATGCCAAAAAATG
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