CK933105

Overview
NameCK933105
Unique NameCK933105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.240e-28
Identity = 74/165 (44.85%), Postives = 103/165 (62.42%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 588
            K    PR P+EKERL  E +LVG YGL+ K ELW ++   ++ +  AR LLT    NP  I   G +LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:    8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.240e-28
Identity = 70/157 (44.59%), Postives = 102/157 (64.97%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG--EALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 585
            K ++ PR P+ KE L  EL+L+G YGLR KRELWR Q  + + R+ AR LL      P+ I E   +ALL R++R G L E  + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:    9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAA----PQEIREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 65/156 (41.67%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582
            K ++ PR P+E ERL+ E +L+ +YGLR K+ELWR Q  L R R  A++L+   +   +R  E EAL R+++  G L++   +  LD +L LTVE+ LERRLQT+V++ G+AK+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:    9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.979e-27
Identity = 68/159 (42.77%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 597
            K +  P+ P+ KERL  EL LVG YGLR KRELW+++      R+ AR LL L  +   +  E +ALL R++  G L E    LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:    9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.322e-26
Identity = 67/169 (39.64%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  109 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 612
            R + KT++ P  P+ KER++ E  L  +YGLR KRE+W+ +  L + R  AR L++  ++  +   E   L   + +YG L+     LD VL+LTVE+ LERRLQTLVF+ G+A++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF     P R K
Sbjct:    6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 66/157 (42.04%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582
            K +  PR P+EKER+D E ++V +YGL+ K+E+WR +  LS IR+ ARDL   L  ++ N ++  + E +++R++RY  L E    LD VL+LTVEN L+RRLQT+VF+  +A S+  AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.152e-25
Identity = 68/159 (42.77%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 597
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L EG + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.152e-25
Identity = 66/156 (42.31%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 585
            K +  PR P+EK+R+DAE +L+ +YGL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   L E    LD VL+L +E+ LERRL+TLV+K  +A ++  AR  I   HI+V  ++V IPSF+V    +  I ++ TSPF
Sbjct:    9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25
Identity = 63/164 (38.41%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 606
            KT+ +PR+P+E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++G + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 585
            K+++ P+RP+EK R++ E RLV EYGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G L    + +D VLAL V   LERRLQTLV++ G+A+S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          
The following BLAST results are available for this feature:
BLAST of CK933105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS9_ENCCU3.240e-2844.8540S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_STAMF3.240e-2844.5930S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_METKA9.426e-2841.6730S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_HYPBU7.979e-2742.7730S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_METJA2.322e-2639.6430S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_THEAC5.172e-2642.0430S ribosomal protein S4P OS=Thermoplasma acidophi... [more]
RS4_THESM1.152e-2542.7730S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_PICTO1.152e-2542.3130S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_METTP1.965e-2538.4130S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_METB62.567e-2542.4130S ribosomal protein S4P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_F05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933105 ID=CK933105; Name=CK933105; organism=Citrus sinensis; type=EST; length=797bp
GGGGCTCTTCACGCCCTTTGCTTAGGCTTTTACAAAGATCGCAGAGAGAG
AGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGTTT
CATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTAT
GAGAAGGAGCGATTGGATGCTGAGTTGAGGCTTGTGGGAGAGTATGGGCT
TCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCATTGAGCCGCATCC
GAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGT
ATTTTCGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTACGGCTTCTT
GGAAGAGGGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGA
ACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCT
AAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGT
TGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCC
AGAAGCACATTGAATTCTCACTCACAAGTCCATTCGGAGGTGGGCGCCCT
GGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGG
TGGAGATGGGGATGAAGAGGATGAAGAATAAATTACCTGTGTGAACAGAT
AGTTTTTTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGAC
TTATCTTCTCTAAGTTTTATGTTTTTATTTGCGAATTTTCTTGCTAT
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