CK933105
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.722e-21 Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 133 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 537 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD VL+L V LERRLQT+V++ G+AKSI+HAR LI HI V + V+ P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.249e-21 Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 133 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 537 KP++ + K+ L EL+L+GEYGLR KRELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQT+V++ G+AKSI+HAR LI HI + + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.836e-21 Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 109 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 R GK + P P+ ER+ +E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V+K G+AK+ AR I HI V + V PS++V V IE+ SP Sbjct: 5 RRLGKKYDTPNHPWIGERIQSEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21 Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = 1 Query: 109 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 R K + P P+ ER+ E RLV +YGL+ K+E+W+ + + R R AR LL + ++ + E E LL + R G L EG KL+ VL LTVE+ L RRLQTLV K G+A+++ AR ++ HI + + ++ P ++V+ + I F +SP Sbjct: 5 RKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.545e-21 Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 109 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 R GK + P P+ ER+ +E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP Sbjct: 5 RRLGKKYDTPNHPWIGERIQSEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20 Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 1 Query: 109 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 R GK + P P+ ER+ E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD++L+L +E+ LERRLQTLV++ G+AK+ AR LI HI V + V PS++V V I + SP Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEREISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.486e-20 Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = 1 Query: 109 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 R GK + P P+ ER+ E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+VF+ G+AK+ AR I HI V + V P++++ V IE+ SP Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.247e-20 Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 1 Query: 121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 K + P+R +EK RL+ E RL+ +YGLR KRELW+ Q L + R AR+L+ L + + + L+ ++RYG + E + D VLAL VE L+RRLQTLV + G A+S AR I HI + + V IP + RV+ + E S P Sbjct: 9 KQYATPKRRFEKTRLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGY--RVERAEEAEISYYGP 162
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METMA (30S ribosomal protein S4P OS=Methanosarcina mazei GN=rps4p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.247e-20 Identity = 56/161 (34.78%), Postives = 90/161 (55.90%), Query Frame = 1 Query: 121 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-------DEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 K+++ PR P+++ R+ AE++LV YGLR K+E+W+ L R+ AR LL E + E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ AR I HI + + IP +V + + HI + +SP Sbjct: 9 KSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
BLAST of CK933105 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.247e-20 Identity = 57/158 (36.08%), Postives = 86/158 (54.43%), Query Frame = 1 Query: 109 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEEGQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 582 R GK + P P+ ER+ E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160 The following BLAST results are available for this feature:
BLAST of CK933105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK933105 ID=CK933105; Name=CK933105; organism=Citrus sinensis; type=EST; length=797bpback to top |