CK933106

Overview
NameCK933106
Unique NameCK933106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.750e-25
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE VRS++M GL WGASKLVPVGYGIKKLQI   + DD V  D ++EE++TA    +++QS D+ AFNK
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEENITA--FEDFVQSMDVAAFNK 227          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 8.816e-25
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA   +EY+QS D+ AFNK
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FDEYVQSMDVAAFNK 224          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.151e-24
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            VLLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI KLQIM  I DD VS+D L E+    E   +++QS DI AFNK
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK---IEEFEDFVQSVDIAAFNK 221          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.151e-24
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI KLQIM  I DD VSVD L E+    +   +++QS DI AFNK
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNK 221          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.565e-24
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE VR+V+M GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +T     +Y+QS DI AFNK
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-ILEEEIT--KFEDYVQSVDIAAFNK 264          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 112.464 bits (280), Expect = 2.565e-24
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNK
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNK 224          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.565e-24
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNK
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNK 224          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.565e-24
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNK
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNK 224          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.350e-24
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNK
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNK 224          
BLAST of CK933106 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNK 748
            +LLDVKPWDDETDM KLEE +RS++M GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +++QS D+ AFNK
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEEKITA--FEDFVQSMDVAAFNK 226          
The following BLAST results are available for this feature:
BLAST of CK933106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_XENTR6.750e-2565.12Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_BOVIN8.816e-2565.12Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_DROME1.151e-2466.28Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B2_BOMMO1.151e-2465.12Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1D_XENLA2.565e-2465.12Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_MOUSE2.565e-2463.95Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN2.565e-2463.95Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK2.565e-2463.95Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_RABIT3.350e-2463.95Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]
EF1B_XENLA5.714e-2462.79Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_F06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933106 ID=CK933106; Name=CK933106; organism=Citrus sinensis; type=EST; length=750bp
GGGGGCAAAAGTAGGCAGTTATTATCCTGTGTTGAAGTTGTGCGTCTNTN
CTTGCCTCTGCCTTGATTTGAAGACCAAAATGGCCATCACTTTTTCGGAT
CTCCACACAGAGTCAGGCCTTAAGTCTCTCGATCAGTATCTTTCTGGGAA
ATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCAAGGTCTACG
CTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCCAGCAGCTGG
TACGACAGCGTTTCTTCACGTCTCGCCCCAAGCTTCCCTGGCAAAGCCGT
TGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGACGCCGCCGCAGCCA
AGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGATCTCTTTGGA
GATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAGGCTGCTAA
AAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGTACTTTTGG
ATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTAGAAGAGGCA
GTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATTGGT
CCCAGTCGGTTATGGGATTAAGAAGCTGCAAATCATGATTACAATCGTTG
ACGATCTTGTTTCTGTGGATTCACTGATAGAGGAACACCTCACAGCTGAG
CCCTGCAATGAGTATATTCAGAGCTGCGACATCGTCGCCTTCAATAAAAT
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