CK933117

Overview
NameCK933117
Unique NameCK933117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.093e-15
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  145 WTPEEDQILINYVKLYGHGNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVW 420
            W+ EED +L  YV+ +G   W  + ++    L R  KSC  RW NYL+P IK+G+ T EE+  +I L E  GN+W  IAA +PGRT   +   W
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWW 100          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  127 GLKKGP--WTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTD 399
            G+++ P  WT EEDQ L   V +YG   W+ +  + G  + G  C   W   L PDI++G +  +EE+ ++ L    G+ W  IA R+  RTD
Sbjct:   62 GIRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTD 154          
BLAST of CK933117 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 1
Query:  130 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVW 420
            +KKG W+PEEDQ LIN V  YG GNW  L K     R    CR R+ N L P + +  +T +E+  + ++   +G  +WS +A  +  RTDN+    W
Sbjct:  650 IKKGRWSPEEDQCLINAVNAYGKGNW-ILIKNHVKGRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQCWRRW 746          
The following BLAST results are available for this feature:
BLAST of CK933117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
AS1_ARATH2.093e-1542.55Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
MYBM_DICDI4.825e-1235.48Myb-like protein M OS=Dictyostelium discoideum GN=... [more]
MYBL_DICDI6.302e-1238.78Myb-like protein L OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933117 ID=CK933117; Name=CK933117; organism=Citrus sinensis; type=EST; length=863bp
GGGTCACATTGTATTCGTGCTTTGAGATCAAACAATTTGATCAGAGAGAA
TTAAAAAGATACATAGCAAAGTTAAATATACTGCGGTGGTCCAAAAATGG
TGAGAGCTCCATGCTGCGAGAAGATGGGATTGAAGAAAGGTCCATGGACT
CCTGAAGAAGATCAAATTTTAATCAATTACGTTAAACTTTATGGCCATGG
CAACTGGCGGGCACTTCCCAAACAAGCAGGTTTATTAAGATGTGGAAAGA
GTTGCCGGCTCCGGTGGATAAATTACTTGCGGCCGGATATTAAACGGGGA
AATTTCACCAGAGAAGAAGAGGACACTATCATCAACCTACATGAAATGCT
CGGAAATAGATGGTCAGCAATCGCAGCAAGACTACCGGGAAGAACGGACA
ACGAAATTAAAAATGTTTGGCACACCCACTTGAAAAAGCGTCTCAAGCAA
AAGCAACAACAAGAGCCCGTGATTAATAATCATAGTAACGCTAATCATGT
TACGGCGAGATCCGAGATCTGCAGCGGCGCCAGTACTCCCGATCGGCAGA
CTCGACTACTACTTCAAGCGACATGTCGTCCGTCACCTCCTCCGCGGCTA
ATAACGCTTGCGTGAAAACAGAGCCGTCGTCGTCCGAAAACAATCACGAC
AGCTTGGTTGAAATAGATGAGAATTTTTGGACGGAAGTGTTGTCGGCTGA
GAACTCGGGCATTAGTATTGAGGACAGCAATGATCGTTTTTCAGCGGTTG
GAAGCGCCGACCCACTGTCTATAGTTGAATTTCAATCATCACTCGATGAT
TTTAGACCAGGTTCTACTTTGTGTGATAACACCGACTTTTGGTTCAATCT
TTTCACCAAAGCT
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