CK933120

Overview
NameCK933120
Unique NameCK933120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: Y3970_STRGG (UPF0678 fatty acid-binding protein-like protein SGR_3970 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=SGR_3970 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 49/160 (30.63%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   48 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASKVREVS---RVFELVNGELRFVVQMATNHLTSLRPHLKAVLRKL 506
            +HP + P+++LLG W G G   +P     ++G+E+ F+H  G+  + Y   TW L        P+  E+GYWR + D  +EVV+A+  G++E+  G    ++  I+L ++ V   +     S   R++  V  +L +V + AT  +  LRP++ A L+K+
Sbjct:    8 LHPDLVPLAFLLGNWAGAGVSDFPGAEKCNFGQEVTFSHD-GRDFLEYVSHTWVLDDEGKQVRPLETETGYWRIDKDRKVEVVMARDQGVIEIWYGELADQKPQIDLVTDAVARTAASGPYSGGKRLYGYVKSDLMWVGEKATPEV-ELRPYMSAHLKKV 165          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: Y452_FRASC (UPF0678 fatty acid-binding protein-like protein Francci3_0452 OS=Frankia sp. (strain CcI3) GN=Francci3_0452 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 53/170 (31.18%), Postives = 91/170 (53.53%), Query Frame = 3
Query:   42 VPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGS-------GEPMHAESGYWR--PNPDGS--IEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASKVREVS---RVFELVNG-ELRFVVQMATNHLTSLRPHLKAVLRKL 506
            V +H ++ P+++L+GTWRG+G GGY  ++ F YG+E+ F  + G+P + Y   TW           G P+  E+G+WR  P  DG   +EV++A   G+ E+  GT       I+L   ++   +  R+V+   R++ LV G +L + + M       ++ HL A L ++
Sbjct:   21 VDLHASLLPLAFLVGTWRGEGVGGYEGLDGFHYGQEITFA-ADGRPALGYVSHTWWADEPRDGREPGSPLATETGFWRVQPGEDGKPVVEVMLAHPFGIAEIYVGTVTGTR--IDLDHNVLIRTATARDVTRSVRLYGLVEGCDLAYAIDMEAEG-KPMQSHLSARLHRV 186          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: Y373_SALAI (UPF0678 fatty acid-binding protein-like protein Sare_0373 OS=Salinispora arenicola (strain CNS-205) GN=Sare_0373 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   39 GVPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGYWRP-----NPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASKVREVS---RVFELVNGELRFVVQM-ATNHLTSLRPHLKAVL 497
            G  +HPA+  +   +G WRG+G GGYPTI  FDYG+E+  +H  G+P + Y  + W L        P   E G+WRP        G  E ++   TG++E+  G     +  +E  ++ V      +EV+   R+F +V G L +  +M A  H   L PHL A L
Sbjct:   31 GPKLHPALDGLLPYVGVWRGRGRGGYPTIEDFDYGQEIRISHD-GRPFLCYESRAWLLDEQSRPIRPAGREMGWWRPVLAGDRATGEWEALMTTPTGVMELHLGKRTGTQ--LEFATDAVVRTPTAKEVTAGHRLFGIVEGALLYAQEMAAVGH--GLTPHLSARL 191          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: Y1365_STRAW (UPF0678 fatty acid-binding protein-like protein SAV_1365 OS=Streptomyces avermitilis GN=SAV_1365 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 3
Query:   51 HPAIAPISYLLGTWRGQGSGGYPTINA-FDYGEELNFTHSGGKPVIAYTQKTWKLGSGE----PMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSE---LVGNASKVREVSRVFELVNG-------ELRFVVQMATNHLTS 470
            H  + P+  LLG+W G+G GGYPT+   F Y +EL F+H G +P + Y  + W L + +    P   E G+WR  PDG +E +I Q TG+ E+  G   A    I+L +    L   A KV    R + L +        +L  V Q   +HL++
Sbjct:   23 HALLEPVLGLLGSWYGRGEGGYPTLTGDFGYAQELTFSHDG-RPFLRYEARAWLLDADDAPLRPSARECGWWRLQPDGRVEALITQPTGIAEIMVG--RATGNTIDLSTHEVALAPTAKKVNATRRRYTLTDDDTLTFHHDLEAVGQPMQHHLSA 174          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: Y310_SALTO (UPF0678 fatty acid-binding protein-like protein Strop_0310 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=Strop_0310 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   39 GVPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGYWRPNPDG-----SIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASKVREVS---RVFELVNGELRFVVQM-ATNHLTSLRPHLKAVL 497
            G  +HP +  +   +G WRG+G GGYPTI  FD+ +E+  +H  G+P + Y  + W L        P   E G+WRP  DG       E +++  TG++E+  G     +  +E  ++ V      +EV+   R+F +V G L +  +M A  H   L PHL A L
Sbjct:   31 GPKLHPTLDGLLPYIGVWRGRGRGGYPTIEDFDFAQEIRISHD-GRPFLCYESRAWLLDEQSRPIRPAGREMGWWRPVLDGDRATNEWEALMSTPTGVMELHLGKRTGTQ--LEFATDAVVRTPTAKEVTAGHRLFGIVEGALLYAQEMAAVGH--GLTPHLSARL 191          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: THAP4_HUMAN (THAP domain-containing protein 4 OS=Homo sapiens GN=THAP4 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/160 (33.75%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   48 VHPAIAPISYLLGTWRGQ--GSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPD-GSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASK---VREVSRVFEL-VNGELRFVVQMATNHLTSLRPHLKAVLRKL 506
            ++P + P+S++LGTW     G+G YPT+  F Y EE++ +H  G+P++ ++  ++   + +PMH E G+ R  PD   +  V AQ+TG+VEV++G  N +E  I   S    + +K   V +++R F L   G+L   V MAT     +  HL    +K+
Sbjct:  418 MNPVVEPLSWMLGTWLSDPPGAGTYPTLQPFQYLEEVHISHV-GQPMLNFSFNSFHPDTRKPMHRECGFIRLKPDTNKVAFVSAQNTGVVEVEEGEVNGQELCIASHSIARISFAKEPHVEQITRKFRLNSEGKLEQTVSMATT-TQPMTQHLHVTYKKV 575          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: Y4030_STRAW (UPF0678 fatty acid-binding protein-like protein SAV_4030 OS=Streptomyces avermitilis GN=SAV_4030 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   48 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASKVREVS---RVFELVNGELRFVVQMATNHLTSLRPHLKAVLRKL 506
            +H  + P+++LLG W G G   +P     ++G+E++FTH  G+  + Y   TW L +      P+  ESG+WR +    +E V+ +  G+VE+  G   A++  I+L ++ V   +     S   R++  V  +L +V +  T  +  LRP++ A L+K+
Sbjct:    8 LHKDLVPLAFLLGNWAGAGVHDFPGSEKCNFGQEVSFTHD-GRDFLEYHSHTWVLDADGNKVRPLETESGFWRVDAARKVEAVMTRDDGVVEIWYGELAAKKPQIDLVTDAVARTAAAGPYSGGKRLYGYVKSDLMWVGEKQTPEV-ELRPYMSAHLKKV 165          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: THAP4_RAT (THAP domain-containing protein 4 OS=Rattus norvegicus GN=Thap4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 52/160 (32.50%), Postives = 91/160 (56.88%), Query Frame = 3
Query:   48 VHPAIAPISYLLGTWRGQ--GSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPD-GSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASK---VREVSRVFEL-VNGELRFVVQMATNHLTSLRPHLKAVLRKL 506
            ++P + P+S++LGTW  +  G G +PT+  F Y EE++ +H G +P++ ++  ++   + +PMH E G+ R  PD   +  V AQ+TG+VEV++G  N +E  +   S    + +K   V++++R F L   G+L   V MAT     +  HL    +K+
Sbjct:  410 LNPVVEPLSWMLGTWLSEPPGVGTFPTLQPFQYLEEVHISHVG-QPMLNFSFNSFHPETHKPMHRECGFIRLKPDTNKVAFVSAQNTGVVEVEEGEVNGQELCVSSHSISRISFAKEPHVQQITRKFRLNSEGKLEQTVSMATT-TQPMTQHLHITYKKV 567          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: THAP4_BOVIN (THAP domain-containing protein 4 OS=Bos taurus GN=THAP4 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 54/158 (34.18%), Postives = 86/158 (54.43%), Query Frame = 3
Query:   54 PAIAPISYLLGTWRGQ--GSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPD-GSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASK---VREVSRVFEL-VNGELRFVVQMATNHLTSLRPHLKAVLRKL 506
            P + P+S++LGTW  +  G+G +PT+  F Y EE + +H G +P++ ++   +   + +PMH E G+ R  PD   +  V AQ+TG+VEV++G  N +E  I   S    + +K   V +++R F L   G L   V MAT     L  HL    +K+
Sbjct:  427 PVVEPLSWMLGTWLSEPPGAGTFPTLQPFRYLEEAHISHVG-QPMLNFSFNAFHPDTHKPMHRECGFIRLEPDTNKVAFVSAQNTGIVEVEEGEVNGQELCIASHSIARISFAKEPHVEQITRKFRLNSEGNLEQTVSMATT-TQPLTQHLHVTYKKV 582          
BLAST of CK933120 vs. ExPASy Swiss-Prot
Match: THAP4_MOUSE (THAP domain-containing protein 4 OS=Mus musculus GN=Thap4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 52/160 (32.50%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   48 VHPAIAPISYLLGTWRGQ--GSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPD-GSIEVVIAQSTGLVEVQKGTYNAEEKVIELQSELVGNASK---VREVSRVFEL-VNGELRFVVQMATNHLTSLRPHLKAVLRKL 506
            ++P + P+S++LGTW     G G +PT+  F Y EE++ +H G +P++ ++  ++   + +PMH E G+ R  PD   +  V AQ+TG+VEV++G  N +E  +   S    + +K   V +++R F L   G+L   V MAT     +  HL    +K+
Sbjct:  410 LNPVVEPLSWMLGTWLSDPPGVGTFPTLQPFQYLEEVHISHVG-QPMLNFSFNSFHPETHKPMHRECGFIRLKPDTNKVAFVSAQNTGIVEVEEGEVNGQELCVSSHSVSRISFAKEPHVEQITRKFRLNSEGKLEQTVSMATT-TQPMTQHLHITYKKV 567          
The following BLAST results are available for this feature:
BLAST of CK933120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
Y3970_STRGG6.539e-1830.63UPF0678 fatty acid-binding protein-like protein SG... [more]
Y452_FRASC1.115e-1731.18UPF0678 fatty acid-binding protein-like protein Fr... [more]
Y373_SALAI1.457e-1733.73UPF0678 fatty acid-binding protein-like protein Sa... [more]
Y1365_STRAW9.443e-1734.19UPF0678 fatty acid-binding protein-like protein SA... [more]
Y310_SALTO2.104e-1632.53UPF0678 fatty acid-binding protein-like protein St... [more]
THAP4_HUMAN3.588e-1633.75THAP domain-containing protein 4 OS=Homo sapiens G... [more]
Y4030_STRAW1.044e-1529.38UPF0678 fatty acid-binding protein-like protein SA... [more]
THAP4_RAT2.326e-1532.50THAP domain-containing protein 4 OS=Rattus norvegi... [more]
THAP4_BOVIN2.326e-1534.18THAP domain-containing protein 4 OS=Bos taurus GN=... [more]
THAP4_MOUSE3.038e-1532.50THAP domain-containing protein 4 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_D02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933120 ID=CK933120; Name=CK933120; organism=Citrus sinensis; type=EST; length=673bp
GGGGGAAGTGTGAAACTGTGGAAATGGAGNNNNGTGGTGGAGTTCCAGTA
CACCCAGCAATAGCACCAATATCCTACTTGCTGGGAACATGGAGAGGCCA
GGGCTCGGGTGGGTACCCTACCATCAATGCCTTCGATTATGGAGAAGAGC
TCAATTTCACACATTCTGGTGGCAAGCCAGTGATAGCATATACCCAGAAG
ACTTGGAAACTGGGTTCAGGAGAGCCTATGCATGCTGAGAGTGGCTACTG
GAGGCCCAACCCTGATGGTTCCATTGAAGTTGTCATTGCTCAAAGCACTG
GCCTTGTTGAAGTTCAGAAAGGAACATATAATGCAGAAGAGAAAGTAATC
GAGCTTCAGAGTGAACTTGTGGGAAATGCTTCCAAGGTGCGAGAGGTAAG
CAGAGTTTTTGAGCTGGTTAATGGTGAACTGCGTTTTGTGGTTCAAATGG
CTACCAACCACCTGACTAGTCTTCGTCCACATCTGAAAGCCGTGCTCAGG
AAACTATGATTGTACAATCACTATGTTATTTCTCTTGATATACTGGCAAA
GCGCTCTATGAATGAGCATCTGTTGTAGTGGTACTGACTTGTTGGGGAAG
GTTTTGGTTTCATAATAATAAAAAACTGCTCTCATATACTAAAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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