CK933130

Overview
NameCK933130
Unique NameCK933130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933130_ssr210 microsatellite CK933130_ssr210:210..219. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1532 contig Csv1_Contig1532:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933130 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  281 LLGGVQESRGAENSNEIESLARFAIEEHNKKENALLXXXXXXXXXXXXXXGTMHHLTVEAIDAGTKKLYEAKVWVKPWLNFKDLQEFKHVGD 556
            ++GGV++     N  ++ESLARFA++EHNK EN  L              GTMHHLTVE  D  T K+YEAKV  K W N K L+ F H+ D
Sbjct:    9 IVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFNHLHD 100          
BLAST of CK933130 vs. ExPASy Swiss-Prot
Match: CYT3_ORYSJ (Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  269 DKMALLGGVQESRGAENSNEIESLARFAIEEHNKKENALLXXXXXXXXXXXXXXGTMHHLTVEAIDAGTKKLYEAKVWVKPWLNFKDLQEFKHVGDSPA-SFTSSDLGVKKD 601
            D+  L+ G+  +   E + E E  ARFA+ E+NK + A L              GT+H L +E +D+G K LY AKVWVKPWL+FK + EF+HVGDS + S T++D    +D
Sbjct:   41 DESVLVRGMLAAIRREQA-EAEDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEFRHVGDSQSQSATAADDNAGQD 151          
BLAST of CK933130 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.858e-14
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  284 LGGVQES-RGAENSNEIESLARFAIEEHNKKENALLXXXXXXXXXXXXXXGTMHHLTVEAID-AGTKKLYEAKVWVKPWLNFKDLQEFKHVGDSPA 565
            +GG+ ++  G EN      LARFA+ EHN K NA+L              G MH+LTVE  +  G  KLYEAKVW + W NFK LQ+FK + D+ A
Sbjct:   56 VGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPLDDATA 151          
The following BLAST results are available for this feature:
BLAST of CK933130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYT1_ARATH8.035e-1746.74Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]
CYT3_ORYSJ3.053e-1641.96Cysteine proteinase inhibitor 3 OS=Oryza sativa su... [more]
CYT2_ORYSJ2.858e-1444.79Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933130 ID=CK933130; Name=CK933130; organism=Citrus sinensis; type=EST; length=829bp
GGGGGCTTACTCATTACAGCAAAGCATAAAATTGAGAAACACAACCGAAN
NNNGTTGATCGACAGGTGCAGTCCACGTGTCTGAATCAGGAGACCTCTTC
GCTGCATGCAAAAGAATTGAAAAGAAACGGGGACAGGAAACGCCATAAGT
ACAGCAAATCTATTTAAGCACCATGGCCAAATCCACCAATCCCTTGATTT
CATTAAATACTCTCTCTCTGCTTCTGTTTCTGATCATATCTGCGACGGCA
AATTCTGAATTTTGCGACGATAAAATGGCCTTGCTTGGCGGAGTACAGGA
ATCCCGAGGTGCCGAAAACAGCAATGAAATTGAAAGCCTCGCTCGATTCG
CCATCGAAGAACACAACAAAAAAGAGAATGCTTTGCTGGAGTTTGTGAAA
GTGGTGAAGGCGCAAGAGCAGGTGGTTGCTGGTACCATGCATCATCTAAC
AGTGGAGGCTATTGATGCTGGTACGAAGAAGCTATATGAAGCGAAAGTGT
GGGTCAAGCCATGGTTGAATTTTAAGGATTTGCAGGAATTTAAGCACGTT
GGTGATTCCCCGGCCTCTTTCACCTCTTCAGATCTTGGTGTTAAGAAAGA
TGGTCATTGCCCTGGATGGCAGGCAGTTCCCGTACATGATCCTCAAGTCC
AGGATGCAGCCAATCATGCTATCCAAACCATTCAGCAAAGGTCCAACTCC
CTCTTCCCTTATGTACTTCAGGAGATTGTTCATGCAAAAGCTGAGGTGAT
TGAGGATTTTGCGAAATTTGCCATGCTTCTGAAAGTGAAGAGGGGAGAAA
AAGAGGAGAAGCTCAATGTTGAAGTACAC
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