CK933132

Overview
NameCK933132
Unique NameCK933132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 67/117 (57.26%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 67/117 (57.26%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 3 
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAAR 461
            KGG+ + K     SRS +AGLQFPVGR+ R L+KG YA+R+G+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK++ +
Sbjct:    6 KGGKAKGKSK---SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKSSQK 123
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 69/116 (59.48%), Postives = 80/116 (68.97%), Query Frame = 3 
Query:  102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            GG+ R+K     +RS +AGLQFPVGRV R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLAV+NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    8 GGKARAKAK---TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK+RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK+RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK+RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK+RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A4_RAT (Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 68/119 (57.14%), Postives = 82/119 (68.91%), Query Frame = 3 
Query:   93 ATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            A +GG+ R+K     SRS +AGLQFPVGRV R L++G YA+R+G+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    5 AKQGGKARAKAK---SRSFRAGLQFPVGRVHRLLRQGNYAERIGAGTPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 67/117 (57.26%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  SRS +AGLQFPVGRV R L+KG Y++RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
The following BLAST results are available for this feature:
BLAST of CK933132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A1J_HUMAN9.323e-3057.26Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ ... [more]
H2A1H_HUMAN9.323e-3057.26Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH ... [more]
H2A_URECA1.218e-2954.55Histone H2A OS=Urechis caupo PE=3 SV=2[more]
H2A_ONCMY1.218e-2959.48Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_MYTGA1.218e-2957.39Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED1.218e-2957.39Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH1.218e-2957.39Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA1.218e-2957.39Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2A4_RAT1.218e-2957.14Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2[more]
H2A3_RAT1.218e-2957.26Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933132 ID=CK933132; Name=CK933132; organism=Citrus sinensis; type=EST; length=655bp
GCGGGGATCGCAAACCGCTTTGAATTTATNNNAAACTCCCAATCTTCCTC
NNAAGAAAAACCCATTTCTCAACCATGAGTTCAGAAGCTGCAGCAACCAA
GGGTGGGCGGGGCAGGTCCAAGGACACGAAACCGGTGTCCAGATCCCACA
AGGCCGGTCTCCAGTTCCCGGTTGGCCGTGTCGCTCGCTTCCTCAAGAAA
GGCCGATACGCCCAGCGCGTCGGATCCGGCTCTCCCGTCTATCTTTCCGC
CGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCTGGGAACGCGG
CGAGGGACAACAAGAAGAACAGAATCATTCCAAGGCGCATTCAGTTGGCT
GTGAAAAACGACGAGGAGTTTAGCAAACTGCTTGGCTCTGTGACTATCGC
TAATGGTGGTGTGTTGCCTAACATTCATCAGAACTTGCTGCCGAAGAAAG
CTGCAGCACGGAAGGGCGAAATTGGATCCGTGTCTCAGGAGTTTTAGGGG
TTTAATTAGGGATCTGGAATCTTCGATTTCGGGTTATGTTTATAAGTATG
TAGTGAATTTGGGTTTTCACTTTCATATGTGTAAATCTCATTTTGGATAA
TTGAGTAAAAATCCTGGGTTTCTTCGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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