CK933132

Overview
NameCK933132
Unique NameCK933132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_DROYA (Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS++AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_DROSI (Histone H2A OS=Drosophila simulans GN=His2A PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS++AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_DROME (Histone H2A OS=Drosophila melanogaster GN=His2A PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS++AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS++AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS++AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG Y++RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 66/115 (57.39%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  +RS +AGLQFPVGR+ R L+KG YAQRVG+G+P                  GNAARDNKK+RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKVKGKSKTRSSRAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1_SCHPO (Histone H2A-alpha OS=Schizosaccharomyces pombe GN=hta1 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 69/118 (58.47%), Postives = 80/118 (67.80%), Query Frame = 3 
Query:  138 SRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQE 491
            SRS KAGL FPVGRV R L+KG YAQRVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGV+PNI+ +LLPK +    G  G  SQE
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTS----GRTGKPSQE 131
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG Y++RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
[Close]
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG Y++RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
The following BLAST results are available for this feature:
BLAST of CK933132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_DROYA2.077e-2957.39Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=... [more]
H2A_DROSI2.077e-2957.39Histone H2A OS=Drosophila simulans GN=His2A PE=3 S... [more]
H2A_DROME2.077e-2957.39Histone H2A OS=Drosophila melanogaster GN=His2A PE... [more]
H2A_DROHY2.077e-2957.39Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2[more]
H2A_DROER2.077e-2957.39Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=... [more]
H2A1D_HUMAN2.077e-2956.41Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A_SEPOF2.713e-2957.39Histone H2A OS=Sepia officinalis PE=1 SV=2[more]
H2A1_SCHPO2.713e-2958.47Histone H2A-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2A1_MOUSE2.713e-2956.41Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE... [more]
H2A1K_MOUSE2.713e-2956.41Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933132 ID=CK933132; Name=CK933132; organism=Citrus sinensis; type=EST; length=655bp
GCGGGGATCGCAAACCGCTTTGAATTTATNNNAAACTCCCAATCTTCCTC
NNAAGAAAAACCCATTTCTCAACCATGAGTTCAGAAGCTGCAGCAACCAA
GGGTGGGCGGGGCAGGTCCAAGGACACGAAACCGGTGTCCAGATCCCACA
AGGCCGGTCTCCAGTTCCCGGTTGGCCGTGTCGCTCGCTTCCTCAAGAAA
GGCCGATACGCCCAGCGCGTCGGATCCGGCTCTCCCGTCTATCTTTCCGC
CGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCTGGGAACGCGG
CGAGGGACAACAAGAAGAACAGAATCATTCCAAGGCGCATTCAGTTGGCT
GTGAAAAACGACGAGGAGTTTAGCAAACTGCTTGGCTCTGTGACTATCGC
TAATGGTGGTGTGTTGCCTAACATTCATCAGAACTTGCTGCCGAAGAAAG
CTGCAGCACGGAAGGGCGAAATTGGATCCGTGTCTCAGGAGTTTTAGGGG
TTTAATTAGGGATCTGGAATCTTCGATTTCGGGTTATGTTTATAAGTATG
TAGTGAATTTGGGTTTTCACTTTCATATGTGTAAATCTCATTTTGGATAA
TTGAGTAAAAATCCTGGGTTTCTTCGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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