CK933132
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3) HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29 Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 Query: 99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 +G +G K +RS +AGLQFPVGRV R L+KG Y++RVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK Sbjct: 4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3) HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29 Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 Query: 99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 +G +G K +RS +AGLQFPVGRV R L+KG Y++RVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK Sbjct: 4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29 Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 Query: 99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 +G +G K +RS +AGLQFPVGRV R L+KG Y++RVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK Sbjct: 4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29 Identity = 66/115 (57.39%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 G+G K SRS +AGLQFPVGR+ R L+KG YA RVG+G+P GNAARDNKK+RIIPR +QLA++NDEE +KLL VTIA GGVLPNI LLPKK Sbjct: 5 GKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29 Identity = 69/122 (56.56%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARK 464 KGG+ ++ K SRS +AGLQFPVGR+ R L+KG YAQRVG+G+P GNAARDNKK RI PR +QLAV+NDEE +KLL VTIA GGVLPNI LLPKK K Sbjct: 6 KGGKAKTGG-KAKSRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTGGDK 126
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 4.627e-29 Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 G+G K SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P GNAARDNKK RI+PR +QLA++NDEE +KLL VTIA GGVLPNI LLPKK Sbjct: 5 GKGGKVKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 7.893e-29 Identity = 65/109 (59.63%), Postives = 77/109 (70.64%), Query Frame = 3 Query: 138 SRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARK 464 SRS KAGL FPVGRV R L+KG YAQRVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGV+PNI+ +LLPK++ K Sbjct: 18 SRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3) HSP 1 Score: 126.331 bits (316), Expect = 1.346e-28 Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 3 Query: 99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 +G +G K +RS +AGLQFPVGRV R L+KG Y++RVG+G+P NAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK Sbjct: 4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAANAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4) HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25 Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 108 RGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSV 482 RG K + SRS KAG+ FPVGR+ R++KKG R+G G+P GNAARDNKK R+ PR I LAV NDEE ++LL VTIA+GGVLPNIH LL KK + KG++ ++ Sbjct: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS-KGKLEAI 127
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25 Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 108 RGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSV 482 RG K + SRS KAG+ FPVGR+ R++KKG R+G G+P GNAARDNKK R+ PR I LAV NDEE ++LL VTIA+GGVLPNIH LL KK + KG++ ++ Sbjct: 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS-KGKLEAI 127 The following BLAST results are available for this feature:
BLAST of CK933132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933132 ID=CK933132; Name=CK933132; organism=Citrus sinensis; type=EST; length=655bpback to top |