CK933132

Overview
NameCK933132
Unique NameCK933132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG Y++RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG Y++RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG Y++RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 66/115 (57.39%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS +AGLQFPVGR+ R L+KG YA RVG+G+P                  GNAARDNKK+RIIPR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 69/122 (56.56%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARK 464
            KGG+ ++   K  SRS +AGLQFPVGR+ R L+KG YAQRVG+G+P                  GNAARDNKK RI PR +QLAV+NDEE +KLL  VTIA GGVLPNI   LLPKK    K
Sbjct:    6 KGGKAKTGG-KAKSRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTGGDK 126          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.627e-29
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G     K  SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK RI+PR +QLA++NDEE +KLL  VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGGKVKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.893e-29
Identity = 65/109 (59.63%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  138 SRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARK 464
            SRS KAGL FPVGRV R L+KG YAQRVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGV+PNI+ +LLPK++   K
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.346e-28
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 3
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            +G +G     K  +RS +AGLQFPVGRV R L+KG Y++RVG+G+P                   NAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    4 RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAANAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 3
Query:  108 RGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSV 482
            RG  K +   SRS KAG+ FPVGR+ R++KKG    R+G G+P                  GNAARDNKK R+ PR I LAV NDEE ++LL  VTIA+GGVLPNIH  LL KK  + KG++ ++
Sbjct:    4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS-KGKLEAI 127          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AY_MOUSE (Core histone macro-H2A.1 OS=Mus musculus GN=H2afy PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 3
Query:  108 RGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSV 482
            RG  K +   SRS KAG+ FPVGR+ R++KKG    R+G G+P                  GNAARDNKK R+ PR I LAV NDEE ++LL  VTIA+GGVLPNIH  LL KK  + KG++ ++
Sbjct:    4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS-KGKLEAI 127          
The following BLAST results are available for this feature:
BLAST of CK933132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A1H_MOUSE2.713e-2956.41Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ... [more]
H2A1F_MOUSE2.713e-2956.41Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ... [more]
H2A1B_HUMAN2.713e-2956.41Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2A... [more]
H2A_MYTTR3.543e-2957.39Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A_CAEEL3.543e-2956.56Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2A_LITVA4.627e-2956.52Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A2_SCHPO7.893e-2959.63Histone H2A-beta OS=Schizosaccharomyces pombe GN=h... [more]
H2A1F_RAT1.346e-2855.56Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=... [more]
H2AY_RAT5.294e-2549.60Core histone macro-H2A.1 OS=Rattus norvegicus GN=H... [more]
H2AY_MOUSE5.294e-2549.60Core histone macro-H2A.1 OS=Mus musculus GN=H2afy ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933132 ID=CK933132; Name=CK933132; organism=Citrus sinensis; type=EST; length=655bp
GCGGGGATCGCAAACCGCTTTGAATTTATNNNAAACTCCCAATCTTCCTC
NNAAGAAAAACCCATTTCTCAACCATGAGTTCAGAAGCTGCAGCAACCAA
GGGTGGGCGGGGCAGGTCCAAGGACACGAAACCGGTGTCCAGATCCCACA
AGGCCGGTCTCCAGTTCCCGGTTGGCCGTGTCGCTCGCTTCCTCAAGAAA
GGCCGATACGCCCAGCGCGTCGGATCCGGCTCTCCCGTCTATCTTTCCGC
CGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCTGGGAACGCGG
CGAGGGACAACAAGAAGAACAGAATCATTCCAAGGCGCATTCAGTTGGCT
GTGAAAAACGACGAGGAGTTTAGCAAACTGCTTGGCTCTGTGACTATCGC
TAATGGTGGTGTGTTGCCTAACATTCATCAGAACTTGCTGCCGAAGAAAG
CTGCAGCACGGAAGGGCGAAATTGGATCCGTGTCTCAGGAGTTTTAGGGG
TTTAATTAGGGATCTGGAATCTTCGATTTCGGGTTATGTTTATAAGTATG
TAGTGAATTTGGGTTTTCACTTTCATATGTGTAAATCTCATTTTGGATAA
TTGAGTAAAAATCCTGGGTTTCTTCGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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