CK933132

Overview
NameCK933132
Unique NameCK933132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1534 contig Csv1_Contig1534:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARK 464
            G+G+++ TK  SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P                  GNAARDNKK+RIIPR +QLAV+NDEE +KLL  VTIA GGVLPNI   LLPKK   ++
Sbjct:    5 GKGKAQGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 124          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 3
Query:   87 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKA 452
            AA  + G G  K  KPVSRS K+GLQFPVGR+ R+LKKGRY++RVG+G+P                  GNAARDNKKNRIIPR + LAV+NDEE   LL  VTIA+GGVLPNI+  LLPKK+
Sbjct:   11 AAGRRSGGGPKK--KPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKS 130          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31
Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 470
            G+G     K  SRS +AGLQFPVGRV RFL+KG YA RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK  ++  +
Sbjct:    5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31
Identity = 76/142 (53.52%), Postives = 88/142 (61.97%), Query Frame = 3
Query:   75 MSSEAAATK-----GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVS 485
            M S  A TK     GGR      K VS+S KAGLQFPVGR+AR+LKKGRYA R GSG+P                  GNAARDNKKNRI PR + LA++NDEE  +LL  VTIA+GGVLPNI+  LLPKK+ A   +    S
Sbjct:    1 MESSQATTKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKAS 142          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31
Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 470
            G+G     K  SRS +AGLQFPVGRV RFL+KG YA RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK  ++  +
Sbjct:    5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31
Identity = 70/115 (60.87%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            G+G    +K  SRS +AGLQFPVGRV RFLKKG Y  RVG+G+P                  GNAARDNKK+RIIPR +QLAV+NDEE +KLLG VTIA GGVLPNI   LLPKK
Sbjct:    5 GKGAKAKSKAKSRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKK 119          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.944e-31
Identity = 78/138 (56.52%), Postives = 91/138 (65.94%), Query Frame = 3
Query:  102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK---AAARKGEIG----SVSQEF 494
            GG+ R+K     +RS +AGLQFPVGRV R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLAV+NDEE +KLLG VTIA GGVLPNI   LLPKK   AAA  G+ G    S SQE+
Sbjct:    8 GGKARAKAK---TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSGKSGKKGSSQSQEY 142          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.457e-31
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKG 467
            GG+ R+K     SRS +AGLQFPVGRV R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK++A  G
Sbjct:    8 GGKARAKAK---SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSATVG 126          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 70/117 (59.83%), Postives = 78/117 (66.67%), Query Frame = 3
Query:   99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449
            K G   S      SRS KAGL FPVGRV R L+KG YAQRVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGV+P IHQNLLPKK
Sbjct:    5 KSGGKASGSKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKK 121          
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKG 467
            GG+ R+K     SRS +AGLQFPVGRV R L+KG YA+RVG+G+P                  GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI   LLPKK +A  G
Sbjct:    8 GGKARAKAK---SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVG 126          
The following BLAST results are available for this feature:
BLAST of CK933132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_ACRFO2.898e-3156.67Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A4_ARATH2.898e-3159.02Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_PARAN3.785e-3156.56Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A5_ARATH3.785e-3153.52Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A3_PSAMI3.785e-3156.56Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2A2_PSAMI3.785e-3160.87Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2AX_DANRE4.944e-3156.52Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2AX_MOUSE6.457e-3158.20Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2A_COCIM8.432e-3159.83Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2AX_HUMAN8.432e-3158.20Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933132 ID=CK933132; Name=CK933132; organism=Citrus sinensis; type=EST; length=655bp
GCGGGGATCGCAAACCGCTTTGAATTTATNNNAAACTCCCAATCTTCCTC
NNAAGAAAAACCCATTTCTCAACCATGAGTTCAGAAGCTGCAGCAACCAA
GGGTGGGCGGGGCAGGTCCAAGGACACGAAACCGGTGTCCAGATCCCACA
AGGCCGGTCTCCAGTTCCCGGTTGGCCGTGTCGCTCGCTTCCTCAAGAAA
GGCCGATACGCCCAGCGCGTCGGATCCGGCTCTCCCGTCTATCTTTCCGC
CGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCTGGGAACGCGG
CGAGGGACAACAAGAAGAACAGAATCATTCCAAGGCGCATTCAGTTGGCT
GTGAAAAACGACGAGGAGTTTAGCAAACTGCTTGGCTCTGTGACTATCGC
TAATGGTGGTGTGTTGCCTAACATTCATCAGAACTTGCTGCCGAAGAAAG
CTGCAGCACGGAAGGGCGAAATTGGATCCGTGTCTCAGGAGTTTTAGGGG
TTTAATTAGGGATCTGGAATCTTCGATTTCGGGTTATGTTTATAAGTATG
TAGTGAATTTGGGTTTTCACTTTCATATGTGTAAATCTCATTTTGGATAA
TTGAGTAAAAATCCTGGGTTTCTTCGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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