CK933132
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31 Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 3 Query: 105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARK 464 G+G+++ TK SRS +AGLQFPVGR+ R L+KG YA+RVG+G+P GNAARDNKK+RIIPR +QLAV+NDEE +KLL VTIA GGVLPNI LLPKK ++ Sbjct: 5 GKGKAQGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 124
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31 Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 3 Query: 87 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKA 452 AA + G G K KPVSRS K+GLQFPVGR+ R+LKKGRY++RVG+G+P GNAARDNKKNRIIPR + LAV+NDEE LL VTIA+GGVLPNI+ LLPKK+ Sbjct: 11 AAGRRSGGGPKK--KPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKS 130
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31 Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 3 Query: 105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 470 G+G K SRS +AGLQFPVGRV RFL+KG YA RVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK ++ + Sbjct: 5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31 Identity = 76/142 (53.52%), Postives = 88/142 (61.97%), Query Frame = 3 Query: 75 MSSEAAATK-----GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVS 485 M S A TK GGR K VS+S KAGLQFPVGR+AR+LKKGRYA R GSG+P GNAARDNKKNRI PR + LA++NDEE +LL VTIA+GGVLPNI+ LLPKK+ A + S Sbjct: 1 MESSQATTKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKAS 142
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31 Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 3 Query: 105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGE 470 G+G K SRS +AGLQFPVGRV RFL+KG YA RVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK ++ + Sbjct: 5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31 Identity = 70/115 (60.87%), Postives = 79/115 (68.70%), Query Frame = 3 Query: 105 GRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 G+G +K SRS +AGLQFPVGRV RFLKKG Y RVG+G+P GNAARDNKK+RIIPR +QLAV+NDEE +KLLG VTIA GGVLPNI LLPKK Sbjct: 5 GKGAKAKSKAKSRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKK 119
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 4.944e-31 Identity = 78/138 (56.52%), Postives = 91/138 (65.94%), Query Frame = 3 Query: 102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK---AAARKGEIG----SVSQEF 494 GG+ R+K +RS +AGLQFPVGRV R L+KG YA+RVG+G+P GNAARDNKK RIIPR +QLAV+NDEE +KLLG VTIA GGVLPNI LLPKK AAA G+ G S SQE+ Sbjct: 8 GGKARAKAK---TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSGKSGKKGSSQSQEY 142
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 6.457e-31 Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 3 Query: 102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKG 467 GG+ R+K SRS +AGLQFPVGRV R L+KG YA+RVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK++A G Sbjct: 8 GGKARAKAK---SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSATVG 126
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31 Identity = 70/117 (59.83%), Postives = 78/117 (66.67%), Query Frame = 3 Query: 99 KGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKK 449 K G S SRS KAGL FPVGRV R L+KG YAQRVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGV+P IHQNLLPKK Sbjct: 5 KSGGKASGSKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKK 121
BLAST of CK933132 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31 Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 3 Query: 102 GGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRRIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKG 467 GG+ R+K SRS +AGLQFPVGRV R L+KG YA+RVG+G+P GNAARDNKK RIIPR +QLA++NDEE +KLLG VTIA GGVLPNI LLPKK +A G Sbjct: 8 GGKARAKAK---SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVG 126 The following BLAST results are available for this feature:
BLAST of CK933132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933132 ID=CK933132; Name=CK933132; organism=Citrus sinensis; type=EST; length=655bpback to top |