CK933135
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_SCHPO (Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe GN=sdo1 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.459e-23 Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1 Query: 85 QPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNMFGDFGERG 345 QPVGQ RLTNV+VV+ KK G RFE+ACYKNKV WR+++E DLDEVLQ H V++NVSKG +A +DL AFGTDD + + ++G Sbjct: 5 QPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSKGHVASRQDLKKAFGTDDIDKIILEILQKG 91 HSP 2 Score: 90.8929 bits (224), Expect = 9.019e-18 Identity = 56/164 (34.15%), Postives = 97/164 (59.15%), Query Frame = 2 Query: 308 IKQICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQK--HFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRN---LQGRLEILAVS 784 I +I LEIL+KG+ QV KER Q S+ +RDI + V ++ ++RPY S+IE+ + + F+V + ++K QALE I++LQ+ PI R+ MR+ + V + +L E+L + A + ++N + I + PG ++ D L+RN +G +++L +S Sbjct: 80 IDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVDVKQGKALRERLRSL-ADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNRGMVQVLDMS 242
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_YEAST (Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae GN=SDO1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19 Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1 Query: 85 QPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNMFGDFGERG 345 QP GQ +LTNV++VRLKK RFE+ACY+NKV +R +EKDLDEVLQ H V+ NVSKG++A +DL FGT + ++ + +G Sbjct: 5 QPSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSKGLVANKEDLQKCFGTTNVDDVIEEIMHKG 91
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_METJA (Ribosome maturation protein SDO1 homolog OS=Methanocaldococcus jannaschii GN=MJ0592 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.219e-15 Identity = 40/164 (24.39%), Postives = 82/164 (50.00%), Query Frame = 2 Query: 308 IKQICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL-QGRLEILAVSVHAE 796 +K+I +I+ KG++Q+ K+RE + R I TI+ + T+N +T P+ IE+ M E+ +D S++ Q E++++L+K PI+ + + +P + S L + A + L ++ E+ G+ + L + +G ++ V ++E Sbjct: 77 VKEIAKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIRFEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE 240 HSP 2 Score: 35.039 bits (79), Expect = 1.219e-15 Identity = 21/68 (30.88%), Postives = 28/68 (41.18%), Query Frame = 1 Query: 106 LTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDD 309 L + R HG +FEI + D DE+L V+ + SKG A + L FGT D Sbjct: 9 LEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEELLSKIFGTTD 76
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_PYRAB (Ribosome maturation protein SDO1 homolog OS=Pyrococcus abyssi GN=PYRAB06080 PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 4.074e-12 Identity = 26/97 (26.80%), Postives = 51/97 (52.58%), Query Frame = 2 Query: 329 ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNI 619 IL KGE+Q+ ++R + R IATI+ + V+ T P+ + I R M E+ VD ++ Q +VI+ +++ P++ + + +P + + Sbjct: 80 ILRKGEVQLTAQQRREMLEEKKRQIATIIHRHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKAIRRILPLRIEMKVIAVKIPSEYV 176 HSP 2 Score: 37.7354 bits (86), Expect = 4.074e-12 Identity = 20/63 (31.75%), Postives = 31/63 (49.21%), Query Frame = 1 Query: 121 VVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDD 309 + RLK HG FEI ++ E ++E+L + V+ + KG A K++ FGT D Sbjct: 10 IARLKVHGETFEILVDPYLARDFKEGKEVPIEEILATPYVFKDAHKGDKASEKEMEKIFGTSD 72
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_ENCCU (Ribosome maturation protein SDO1 OS=Encephalitozoon cuniculi GN=SDO1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11 Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1 Query: 88 PVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDL 285 P+ QK+L NV++V LKK G R+E+A Y NK+ +R+ + L E+LQ+ T+Y +VSKG +A+ DL Sbjct: 4 PLNQKKLVNVSIVTLKKFGRRYELAVYPNKLYEYRNGMRTPLSEILQTDTIYRSVSKGEIARQGDL 69 The following BLAST results are available for this feature:
BLAST of CK933135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933135 ID=CK933135; Name=CK933135; organism=Citrus sinensis; type=EST; length=806bpback to top |