CK933135

Overview
NameCK933135
Unique NameCK933135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_SCHPO (Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe GN=sdo1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.459e-23
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   85 QPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNMFGDFGERG 345
            QPVGQ RLTNV+VV+ KK G RFE+ACYKNKV  WR+++E DLDEVLQ H V++NVSKG +A  +DL  AFGTDD   +  +  ++G
Sbjct:    5 QPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSKGHVASRQDLKKAFGTDDIDKIILEILQKG 91          

HSP 2 Score: 90.8929 bits (224), Expect = 9.019e-18
Identity = 56/164 (34.15%), Postives = 97/164 (59.15%), Query Frame = 2
Query:  308 IKQICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQK--HFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRN---LQGRLEILAVS 784
            I +I LEIL+KG+ QV  KER  Q S+ +RDI + V    ++  ++RPY  S+IE+ + +  F+V  + ++K QALE I++LQ+    PI R+ MR+ + V  +   +L E+L +  A  + ++N   +   I  + PG ++  D L+RN    +G +++L +S
Sbjct:   80 IDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVDVKQGKALRERLRSL-ADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNRGMVQVLDMS 242          
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_YEAST (Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae GN=SDO1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   85 QPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNMFGDFGERG 345
            QP GQ +LTNV++VRLKK   RFE+ACY+NKV  +R  +EKDLDEVLQ H V+ NVSKG++A  +DL   FGT +  ++  +   +G
Sbjct:    5 QPSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSKGLVANKEDLQKCFGTTNVDDVIEEIMHKG 91          
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_METJA (Ribosome maturation protein SDO1 homolog OS=Methanocaldococcus jannaschii GN=MJ0592 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.219e-15
Identity = 40/164 (24.39%), Postives = 82/164 (50.00%), Query Frame = 2
Query:  308 IKQICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL-QGRLEILAVSVHAE 796
            +K+I  +I+ KG++Q+  K+RE     + R I TI+ + T+N +T  P+    IE+ M E+   +D   S++ Q  E++++L+K  PI+     + + +P +  S     L  + A    +      L ++ E+  G+  +    L  + +G ++   V  ++E
Sbjct:   77 VKEIAKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIRFEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE 240          

HSP 2 Score: 35.039 bits (79), Expect = 1.219e-15
Identity = 21/68 (30.88%), Postives = 28/68 (41.18%), Query Frame = 1
Query:  106 LTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDD 309
            L    + R   HG +FEI          +     D DE+L    V+ + SKG  A  + L   FGT D
Sbjct:    9 LEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEELLSKIFGTTD 76          
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_PYRAB (Ribosome maturation protein SDO1 homolog OS=Pyrococcus abyssi GN=PYRAB06080 PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.074e-12
Identity = 26/97 (26.80%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  329 ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNI 619
            IL KGE+Q+  ++R      + R IATI+ +  V+  T  P+ +  I R M E+   VD    ++ Q  +VI+ +++  P++     + + +P + +
Sbjct:   80 ILRKGEVQLTAQQRREMLEEKKRQIATIIHRHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKAIRRILPLRIEMKVIAVKIPSEYV 176          

HSP 2 Score: 37.7354 bits (86), Expect = 4.074e-12
Identity = 20/63 (31.75%), Postives = 31/63 (49.21%), Query Frame = 1
Query:  121 VVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDD 309
            + RLK HG  FEI         ++   E  ++E+L +  V+ +  KG  A  K++   FGT D
Sbjct:   10 IARLKVHGETFEILVDPYLARDFKEGKEVPIEEILATPYVFKDAHKGDKASEKEMEKIFGTSD 72          
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SDO1_ENCCU (Ribosome maturation protein SDO1 OS=Encephalitozoon cuniculi GN=SDO1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   88 PVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDL 285
            P+ QK+L NV++V LKK G R+E+A Y NK+  +R+ +   L E+LQ+ T+Y +VSKG +A+  DL
Sbjct:    4 PLNQKKLVNVSIVTLKKFGRRYELAVYPNKLYEYRNGMRTPLSEILQTDTIYRSVSKGEIARQGDL 69          
The following BLAST results are available for this feature:
BLAST of CK933135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SDO1_SCHPO5.459e-2359.77Ribosome maturation protein sdo1 OS=Schizosaccharo... [more]
SDO1_YEAST4.782e-1952.87Ribosome maturation protein SDO1 OS=Saccharomyces ... [more]
SDO1_METJA1.219e-1524.39Ribosome maturation protein SDO1 homolog OS=Methan... [more]
SDO1_PYRAB4.074e-1226.80Ribosome maturation protein SDO1 homolog OS=Pyroco... [more]
SDO1_ENCCU3.670e-1146.97Ribosome maturation protein SDO1 OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_B02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933135 ID=CK933135; Name=CK933135; organism=Citrus sinensis; type=EST; length=806bp
GGGGGTTCGCTTGTTCTGTTAAAACCTGGAAACTGATTGCGAAAGCTTGA
GAAGAAAGAAAGAGAGATGTCGAAGACACTGGTTCAGCCAGTAGGCCAAA
AGCGGCTGACGAACGTCGCCGTCGTTCGTCTCAAAAAGCATGGCATGCGC
TTCGAAATTGCTTGCTACAAGAATAAGGTTCTCTCTTGGCGCTCCCAAGT
AGAGAAAGATTTGGATGAAGTATTGCAGTCGCACACTGTTTATTCGAATG
TGTCAAAAGGAATTCTCGCGAAGTCAAAGGATTTGATTGCAGCATTTGGT
ACTGATGATCAAACAAATATGTTTGGAGATTTTGGAGAAAGGGGAGCTTC
AAGTTGCTGGAAAGGAGAGGGAAACACAGTTCTCTAATCAGTTTCGGGAT
ATTGCAACCATTGTTATGCAGAAGACTGTTAATTCTGAAACTCAACGTCC
TTACACTATTAGTATGATTGAGCGACTTATGCACGAAATTCATTTTGCTG
TTGACCCTAATAGCAGCTCGAAGAGGCAGGCATTGGAAGTCATTCGTGAG
CTTCAGAAGCATTTCCCAATAAAAAGGTCTCCGATGAGGGTGGGACTTAC
TGTTCCAGAGCAAAATATTTCTTCTTTAATGGAGAAACTAGATGCATGGG
ATGCTAGCATTGTCTCCAAAGATAATTCTGGAAGTCAGCTGTCTCTCATT
TGTGAAATGGAGCCAGGTCTTTTTCGGGATTGTGATACCCTACTGAGGAA
TCTGCAGGGCAGGTTGGAAATTCTTGCAGTGTCAGTGCATGCAGAGGGGG
ATACAA
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