CK933137

Overview
NameCK933137
Unique NameCK933137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 30/62 (48.39%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  185 KGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_MACFA (60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 30/62 (48.39%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  185 KGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_HUMAN (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 30/62 (48.39%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  185 KGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL8B_YEAST (60S ribosomal protein L8-B OS=Saccharomyces cerevisiae GN=RPL8B PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 32/63 (50.79%), Postives = 51/63 (80.95%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 191
            +GK+RLG++V++KT++V  LT V+ ED+   +K++  I ANF DKY+E++K WGGGI+G+K+Q
Sbjct:  181 KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQ 243          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL8A_YEAST (60S ribosomal protein L8-A OS=Saccharomyces cerevisiae GN=RPL8A PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 32/63 (50.79%), Postives = 51/63 (80.95%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 191
            +GK+RLG++V++KT++V  LT V+ ED+   +K++  I ANF DKY+E++K WGGGI+G+K+Q
Sbjct:  181 KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQ 243          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_CHICK (60S ribosomal protein L7a OS=Gallus gallus GN=RPL7A PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.639e-13
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            + K+RLG +VH+KT + +  T V  EDK   +K++EA+K N+ND+Y+E+R+ WGG ++G KS
Sbjct:  185 KSKARLGRLVHRKTCTCVAFTQVNPEDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CK933137 vs. ExPASy Swiss-Prot
Match: RL7A_CAEEL (60S ribosomal protein L7a OS=Caenorhabditis elegans GN=rpl-7A PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 27/62 (43.55%), Postives = 45/62 (72.58%), Query Frame = 3
Query:    3 EGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 188
            +GK+ LG++V +KT + + L  V  EDK   +K++E +  NF++++EE+RK WGGG+M +KS
Sbjct:  186 KGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKS 247          
The following BLAST results are available for this feature:
BLAST of CK933137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL7A_MOUSE4.299e-1448.3960S ribosomal protein L7a OS=Mus musculus GN=Rpl7a... [more]
RL7A_MACFA4.299e-1448.3960S ribosomal protein L7a OS=Macaca fascicularis G... [more]
RL7A_HUMAN4.299e-1448.3960S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]
RL8B_YEAST7.332e-1450.7960S ribosomal protein L8-B OS=Saccharomyces cerevi... [more]
RL8A_YEAST7.332e-1450.7960S ribosomal protein L8-A OS=Saccharomyces cerevi... [more]
RL7A_CHICK3.639e-1346.7760S ribosomal protein L7a OS=Gallus gallus GN=RPL7... [more]
RL7A_CAEEL1.529e-1143.5560S ribosomal protein L7a OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_B05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933137 ID=CK933137; Name=CK933137; organism=Citrus sinensis; type=EST; length=404bp
GGGAAGGAAAATCACGTTTGGGATCGATTGTCCACAAGAAGACGGCTTCT
GTATTGTGTTTGACAACAGTTAAGAATGAGGATAAGATGGAATTCAGCAA
GATCCTTGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTTAA
GAAAGAAGTGGGGAGGTGGTATTATGGGCTCCAAATCACAGGCAAAAACC
AAGGCCAAGGAGAAACTTCTTGCTAAGGAAGCTGCTCAGAGGCTGACCAA
GGATTTTGCTCAGTCTTAAGAGAGTCCAATGTTTTGTTATTTCTTGTGCT
TTCATCATCCTTTTATTTTAATGAACATGTTTCTATGTAGTCTCTTAGCA
TTTTACCTTATTAAGATTTTTAATTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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