CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNPW (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain WH7803) GN=lysS PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.251e-42
Identity = 91/196 (46.43%), Postives = 128/196 (65.31%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++KV  LR +G EPYA  +D +    +LQ  +  L  GEE +     V+           GKLAF TL D++GTIQL+ EK  L  + F Q+   VD GD++GV G+++RT++GELSV V  + +LTKSL PLPDK+HGL DV+KRYRQRY+D++  P+  + FR+RA  VS IR+ ++   F+E+ETPVL
Sbjct:    4 LRETRLEKVSALRDQGREPYALTFDPSDRMARLQSDHADLPKGEERDCA---VAVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKAAL-GEAFAQITSLVDAGDLIGVRGTLRRTDRGELSVKVAEWTMLTKSLQPLPDKWHGLADVEKRYRQRYLDLIVTPQSRETFRRRALTVSAIRRWLDEREFLEIETPVL 195          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROMM (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=lysS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.858e-42
Identity = 94/204 (46.08%), Postives = 128/204 (62.75%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK--------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K + L+  G  PYA +++ +HS   LQ  +  LA GEE       VS           GKLAF TL D++GTIQLY EK          L S  F QL   VD GD +GV+G ++RT++GELSV V  + IL+KSL PLPDK+HGL DV+KRYRQRY+D++  P+  + FR+RA +VS IR+ ++   F+E+ETPVL
Sbjct:   12 LRETRLEKAQALKELGNGPYALRFESSHSTANLQADHADLAKGEERLLT---VSVAGRVMTRRVMGKLAFYTLADETGTIQLYLEKATIDAAASNELASGTFVQLTTLVDAGDWIGVTGVLRRTDRGELSVKVQQWQILSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPQSRETFRRRALMVSAIRRWLDDRAFLEIETPVL 212          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNR3 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain RCC307) GN=lysS PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41
Identity = 88/196 (44.90%), Postives = 128/196 (65.31%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K + L   G  PYA +++ +H   +LQ+ +  L NGEE +     V+           GKLAF TL D++G IQL+ EK  L  D F Q+   VD GD +GV G+++RT++GELSV    + +L+KSL PLPDK+HGL DV+KRYRQRY+D++  P+  D FR+RA++VS IR+ ++   F+E+ETPVL
Sbjct:    4 LRDTRLEKAQALIECGQVPYALRFEPSHRTAELQQAHADLPNGEERDVS---VAIAGRVMTRRVMGKLAFFTLADETGPIQLFLEKAAL-GDAFKQITSLVDAGDWIGVKGTLRRTDRGELSVKAAQWQMLSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPDTRDTFRRRAQLVSGIRRWLDERDFLEIETPVL 195          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROMP (Lysyl-tRNA synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=lysS PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41
Identity = 91/204 (44.61%), Postives = 129/204 (63.24%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSD--------QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R+ K   L  KG EPYA  +  THS   L E + +L NG++ N +   V+           GK+AF T+ D  G IQLY EK ++L D         F+ LK  VDIGD +GV G++K+T KGELS+ V+ + +L+KSL PLPDK+HGLTD++KRYRQRY+D++  P   +VF+ RAK +S IR+ ++   F+E+ETP+L
Sbjct:    4 IREARLLKANSLVKKGFEPYAETFKITHSTKFLTEKFGYLENGQDFNLD---VAIAGRVLAKRVMGKIAFYTIADQEGKIQLYLEK-KILDDFEIHAKLLSFEDLKEIVDIGDWIGVYGTIKKTNKGELSIKVSKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPLSKNVFKTRAKCISLIRRWLDEKNFLEIETPIL 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNS9 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9902) GN=lysS PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.606e-41
Identity = 92/199 (46.23%), Postives = 127/199 (63.82%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ---FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K   L   G  PYA  +D +H   +LQ  +  L NGEE       V+           GKLAF TL D++GTIQL+ EK  L + Q   F Q+   VD GD LGVSG+++RT++GELSV V  + +L+KSL PLPDK+HGL DV+KRYRQRY+D++  P+  + FR+RA +VS IR+ ++   F+E+ETPVL
Sbjct:    4 LRDTRLEKANTLEQLGQGPYALTFDPSHRMAELQADHADLPNGEERELS---VAVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKAGLEAQQEGWFKQITSLVDAGDWLGVSGTLRRTDRGELSVKVRDWRMLSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPQSRETFRRRALLVSGIRRWLDERQFLEIETPVL 199          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROMA (Lysyl-tRNA synthetase OS=Prochlorococcus marinus GN=lysS PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.404e-41
Identity = 91/204 (44.61%), Postives = 127/204 (62.25%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLS--------DQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K   LR  G +PYA  +  TH   +LQ  ++ L NG++   +   V+           GKLAF TL D+SG+IQL+ EK  L            F Q+  FVD GD LGV+G ++RT++GELS+ V+S+ IL KSL PLPDK+HGL D++KRYRQRY+D+V  P+    FR+RA  VS IR+ ++   F+E+ETPVL
Sbjct:    4 LRETRLEKAASLRKVGKDPYALNFHPTHKTAELQSDHKDLPNGQDREIK---VAVAGRVLSRRVMGKLAFFTLLDESGSIQLFLEKATLEEFDTSENQVSSFKQITDFVDAGDWLGVNGILRRTDRGELSIKVHSWKILCKSLQPLPDKWHGLADIEKRYRQRYLDLVVNPDSRKTFRRRALTVSAIRRWLDERSFLEIETPVL 204          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM5 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=lysS PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.404e-41
Identity = 91/204 (44.61%), Postives = 129/204 (63.24%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSD--------QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R+ K   L +KG EPYA  +  +HS   L E + +L NG+E +    +VS           GK+AF T+ D  G IQLY EK R++ D         F+ LK  VDIGD +GV G++K+T KGELS+ V+ + +L+KSL PLPDK+HGLTD++KRYRQRY+D++  P    VF+ RAK +S IR+ ++   F+E+ETP+L
Sbjct:    4 IREARLLKANSLINKGFEPYAETFKISHSTRFLNEKFGYLDNGQEFDL---NVSLAGRVLAKRVMGKIAFFTITDQEGKIQLYLEK-RIIDDYEINAKLLSFEDLKEIVDIGDWIGVFGTIKKTNKGELSIKVSKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPLSKTVFKTRAKCISLIRRWLDEKNFLEIETPIL 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM3 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9303) GN=lysS PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.445e-41
Identity = 92/204 (45.10%), Postives = 127/204 (62.25%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK--------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K + L+  G  PYA +++ +H    LQ  +  LA GEE       VS           GKLAF TL D++GTIQLY +K          L S  F QL   VD GD +GV+G ++RT++GELSV V  + IL+KSL PLPDK+HGL DV+KRYRQRY+D++  P+  + FR+RA +VS IR+ ++   F+E+ETPVL
Sbjct:   12 LRETRLEKAQALKELGNGPYALRFESSHRTANLQADHADLAKGEERLLS---VSVAGRVMARRVMGKLAFYTLADETGTIQLYLDKATIDAAASNELASGTFVQLTTLVDAGDWIGVTGVLRRTDRGELSVKVQQWQILSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPQSRETFRRRALMVSAIRRWLDDRAFLEIETPVL 212          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNSC (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=lysS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.582e-41
Identity = 91/199 (45.73%), Postives = 128/199 (64.32%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ---FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K   L   G  PYA  +  +H   +LQ  +  L  GEE +     VS           GKLAF TL D++G+IQL+ EK  L + Q   F Q+   VD GD LGVSG+++RT++GELSV V+ + +LTK+L PLPDK+HGL DV+KRYRQRY+D+V  P+  + FR+RA++VS IR+ ++   F+E+ETPVL
Sbjct:    4 LRDTRLEKARTLEELGQGPYALTFSPSHRMAELQVTHADLPKGEERDVS---VSVAGRVMTRRVMGKLAFFTLADETGSIQLFLEKAGLEAQQEGWFKQITSLVDSGDWLGVSGTLRRTDRGELSVKVSDWRMLTKALQPLPDKWHGLADVEKRYRQRYLDLVVSPDSRETFRRRARLVSGIRRWLDQRDFLEIETPVL 199          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM0 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9301) GN=lysS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.582e-41
Identity = 90/205 (43.90%), Postives = 131/205 (63.90%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK---------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            ++  R++K   L SKG   YA  +  +H+ + L + + +L NG+E   EN  VS           GK+AF T+ D  G IQLY EK         ++LLS  F+ +K  VDIGD +GV G++K+T KGELS+ V  + +L+KSL PLPDK+HGLTD++KRYRQRY+D++  P   +VF+ RAK +S IRK +++  F+E+ETP+L
Sbjct:    4 IKEARLQKASSLVSKGFASYAQSFRVSHTTSFLIQKFDYLENGQE---ENFSVSLAGRVMAKRVMGKIAFFTISDQDGQIQLYLEKRIINLNLEKQKLLS--FEDIKEIVDIGDWIGVYGTIKKTNKGELSIKVEKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPHSKNVFKTRAKCISFIRKWLDNRNFLEIETPIL 203          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_SYNPW5.251e-4246.43Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PROMM6.858e-4246.08Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_SYNR31.528e-4144.90Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PROMP1.528e-4144.61Lysyl-tRNA synthetase OS=Prochlorococcus marinus s... [more]
SYK_SYNS92.606e-4146.23Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PROMA3.404e-4144.61Lysyl-tRNA synthetase OS=Prochlorococcus marinus G... [more]
SYK_PROM53.404e-4144.61Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_PROM34.445e-4145.10Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_SYNSC7.582e-4145.73Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PROM07.582e-4143.90Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
back to top