CK933146
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNPW (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain WH7803) GN=lysS PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 5.251e-42 Identity = 91/196 (46.43%), Postives = 128/196 (65.31%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R++KV LR +G EPYA +D + +LQ + L GEE + V+ GKLAF TL D++GTIQL+ EK L + F Q+ VD GD++GV G+++RT++GELSV V + +LTKSL PLPDK+HGL DV+KRYRQRY+D++ P+ + FR+RA VS IR+ ++ F+E+ETPVL Sbjct: 4 LRETRLEKVSALRDQGREPYALTFDPSDRMARLQSDHADLPKGEERDCA---VAVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKAAL-GEAFAQITSLVDAGDLIGVRGTLRRTDRGELSVKVAEWTMLTKSLQPLPDKWHGLADVEKRYRQRYLDLIVTPQSRETFRRRALTVSAIRRWLDEREFLEIETPVL 195
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROMM (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=lysS PE=3 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 6.858e-42 Identity = 94/204 (46.08%), Postives = 128/204 (62.75%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK--------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R++K + L+ G PYA +++ +HS LQ + LA GEE VS GKLAF TL D++GTIQLY EK L S F QL VD GD +GV+G ++RT++GELSV V + IL+KSL PLPDK+HGL DV+KRYRQRY+D++ P+ + FR+RA +VS IR+ ++ F+E+ETPVL Sbjct: 12 LRETRLEKAQALKELGNGPYALRFESSHSTANLQADHADLAKGEERLLT---VSVAGRVMTRRVMGKLAFYTLADETGTIQLYLEKATIDAAASNELASGTFVQLTTLVDAGDWIGVTGVLRRTDRGELSVKVQQWQILSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPQSRETFRRRALMVSAIRRWLDDRAFLEIETPVL 212
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNR3 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain RCC307) GN=lysS PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41 Identity = 88/196 (44.90%), Postives = 128/196 (65.31%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R++K + L G PYA +++ +H +LQ+ + L NGEE + V+ GKLAF TL D++G IQL+ EK L D F Q+ VD GD +GV G+++RT++GELSV + +L+KSL PLPDK+HGL DV+KRYRQRY+D++ P+ D FR+RA++VS IR+ ++ F+E+ETPVL Sbjct: 4 LRDTRLEKAQALIECGQVPYALRFEPSHRTAELQQAHADLPNGEERDVS---VAIAGRVMTRRVMGKLAFFTLADETGPIQLFLEKAAL-GDAFKQITSLVDAGDWIGVKGTLRRTDRGELSVKAAQWQMLSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPDTRDTFRRRAQLVSGIRRWLDERDFLEIETPVL 195
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROMP (Lysyl-tRNA synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=lysS PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41 Identity = 91/204 (44.61%), Postives = 129/204 (63.24%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSD--------QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R+ K L KG EPYA + THS L E + +L NG++ N + V+ GK+AF T+ D G IQLY EK ++L D F+ LK VDIGD +GV G++K+T KGELS+ V+ + +L+KSL PLPDK+HGLTD++KRYRQRY+D++ P +VF+ RAK +S IR+ ++ F+E+ETP+L Sbjct: 4 IREARLLKANSLVKKGFEPYAETFKITHSTKFLTEKFGYLENGQDFNLD---VAIAGRVLAKRVMGKIAFYTIADQEGKIQLYLEK-KILDDFEIHAKLLSFEDLKEIVDIGDWIGVYGTIKKTNKGELSIKVSKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPLSKNVFKTRAKCISLIRRWLDEKNFLEIETPIL 203
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNS9 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9902) GN=lysS PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.606e-41 Identity = 92/199 (46.23%), Postives = 127/199 (63.82%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ---FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R++K L G PYA +D +H +LQ + L NGEE V+ GKLAF TL D++GTIQL+ EK L + Q F Q+ VD GD LGVSG+++RT++GELSV V + +L+KSL PLPDK+HGL DV+KRYRQRY+D++ P+ + FR+RA +VS IR+ ++ F+E+ETPVL Sbjct: 4 LRDTRLEKANTLEQLGQGPYALTFDPSHRMAELQADHADLPNGEERELS---VAVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKAGLEAQQEGWFKQITSLVDAGDWLGVSGTLRRTDRGELSVKVRDWRMLSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPQSRETFRRRALLVSGIRRWLDERQFLEIETPVL 199
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROMA (Lysyl-tRNA synthetase OS=Prochlorococcus marinus GN=lysS PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.404e-41 Identity = 91/204 (44.61%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLS--------DQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R++K LR G +PYA + TH +LQ ++ L NG++ + V+ GKLAF TL D+SG+IQL+ EK L F Q+ FVD GD LGV+G ++RT++GELS+ V+S+ IL KSL PLPDK+HGL D++KRYRQRY+D+V P+ FR+RA VS IR+ ++ F+E+ETPVL Sbjct: 4 LRETRLEKAASLRKVGKDPYALNFHPTHKTAELQSDHKDLPNGQDREIK---VAVAGRVLSRRVMGKLAFFTLLDESGSIQLFLEKATLEEFDTSENQVSSFKQITDFVDAGDWLGVNGILRRTDRGELSIKVHSWKILCKSLQPLPDKWHGLADIEKRYRQRYLDLVVNPDSRKTFRRRALTVSAIRRWLDERSFLEIETPVL 204
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM5 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=lysS PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.404e-41 Identity = 91/204 (44.61%), Postives = 129/204 (63.24%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSD--------QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R+ K L +KG EPYA + +HS L E + +L NG+E + +VS GK+AF T+ D G IQLY EK R++ D F+ LK VDIGD +GV G++K+T KGELS+ V+ + +L+KSL PLPDK+HGLTD++KRYRQRY+D++ P VF+ RAK +S IR+ ++ F+E+ETP+L Sbjct: 4 IREARLLKANSLINKGFEPYAETFKISHSTRFLNEKFGYLDNGQEFDL---NVSLAGRVLAKRVMGKIAFFTITDQEGKIQLYLEK-RIIDDYEINAKLLSFEDLKEIVDIGDWIGVFGTIKKTNKGELSIKVSKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPLSKTVFKTRAKCISLIRRWLDEKNFLEIETPIL 203
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM3 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9303) GN=lysS PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.445e-41 Identity = 92/204 (45.10%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK--------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R++K + L+ G PYA +++ +H LQ + LA GEE VS GKLAF TL D++GTIQLY +K L S F QL VD GD +GV+G ++RT++GELSV V + IL+KSL PLPDK+HGL DV+KRYRQRY+D++ P+ + FR+RA +VS IR+ ++ F+E+ETPVL Sbjct: 12 LRETRLEKAQALKELGNGPYALRFESSHRTANLQADHADLAKGEERLLS---VSVAGRVMARRVMGKLAFYTLADETGTIQLYLDKATIDAAASNELASGTFVQLTTLVDAGDWIGVTGVLRRTDRGELSVKVQQWQILSKSLQPLPDKWHGLADVEKRYRQRYLDLIVSPQSRETFRRRALMVSAIRRWLDDRAFLEIETPVL 212
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNSC (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=lysS PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 7.582e-41 Identity = 91/199 (45.73%), Postives = 128/199 (64.32%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ---FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 +R R++K L G PYA + +H +LQ + L GEE + VS GKLAF TL D++G+IQL+ EK L + Q F Q+ VD GD LGVSG+++RT++GELSV V+ + +LTK+L PLPDK+HGL DV+KRYRQRY+D+V P+ + FR+RA++VS IR+ ++ F+E+ETPVL Sbjct: 4 LRDTRLEKARTLEELGQGPYALTFSPSHRMAELQVTHADLPKGEERDVS---VSVAGRVMTRRVMGKLAFFTLADETGSIQLFLEKAGLEAQQEGWFKQITSLVDSGDWLGVSGTLRRTDRGELSVKVSDWRMLTKALQPLPDKWHGLADVEKRYRQRYLDLVVSPDSRETFRRRARLVSGIRRWLDQRDFLEIETPVL 199
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM0 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9301) GN=lysS PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 7.582e-41 Identity = 90/205 (43.90%), Postives = 131/205 (63.90%), Query Frame = 1 Query: 217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK---------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804 ++ R++K L SKG YA + +H+ + L + + +L NG+E EN VS GK+AF T+ D G IQLY EK ++LLS F+ +K VDIGD +GV G++K+T KGELS+ V + +L+KSL PLPDK+HGLTD++KRYRQRY+D++ P +VF+ RAK +S IRK +++ F+E+ETP+L Sbjct: 4 IKEARLQKASSLVSKGFASYAQSFRVSHTTSFLIQKFDYLENGQE---ENFSVSLAGRVMAKRVMGKIAFFTISDQDGQIQLYLEKRIINLNLEKQKLLS--FEDIKEIVDIGDWIGVYGTIKKTNKGELSIKVEKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPHSKNVFKTRAKCISFIRKWLDNRNFLEIETPIL 203 The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 437
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bpback to top |