CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK1_MYCPU (Lysyl-tRNA synthetase 1 OS=Mycoplasma pulmonis GN=lysS1 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.170e-31
Identity = 72/200 (36.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            ++E +R  ++KK E L  K  + + ++    +S N++ E Y H +  E    +   +           F     + ++D +G IQLY +K+ L  ++  +    +DIGDI+ V G++ +T KGEL++ VN F +LTK L PL +KYHGL DV++RYR+RY+D++S P + ++F  R K++S+IRK  +   F+EVETP+L
Sbjct:    9 EQEIIRREKLKKYESLGIKTFKKFDHEKINIYS-NEIVEKYNHFSKDELLEKQIKLIIAGRILTQRGPF-----IVIQDTNGKIQLYVDKKEL--EEQKETLALLDIGDIIYVKGTLMKTMKGELTIKVNFFDLLTKGLTPLAEKYHGLVDVEERYRKRYLDLISNPNIKEIFWTRTKVISKIRKFFDEQNFMEVETPML 200          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_DICNV (Lysyl-tRNA synthetase OS=Dichelobacter nodosus (strain VCS1703A) GN=lysS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.113e-31
Identity = 79/201 (39.30%), Postives = 119/201 (59.20%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGT-IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D   + A R +K++++R      +      TH A QL   + H    E + S+   V+           GK +F+ ++D SG  IQLY   + L  + +++ K + D+GDI+  SGS+ RT+ GEL+V  N+  +LTKSL PLPDK+HGLTD + RYRQRYVD++   +  DVF+ R+KI+S IR   E+  F+EVETP++
Sbjct:    9 DENKLIAERRQKLQKIRDTQKIAFPNDARPTHKAAQLHRDFDH--GDEAALSQAGTVAIAGRMMGKRVMGKASFVHVQDGSGEQIQLYVSSDALTEEVYEEFKTW-DVGDIIFASGSLFRTKTGELTVQTNAIRLLTKSLRPLPDKFHGLTDQEIRYRQRYVDLMVNAQSRDVFKARSKIISYIRHFFEARDFLEVETPMM 206          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BLOPB (Lysyl-tRNA synthetase OS=Blochmannia pennsylvanicus (strain BPEN) GN=lysS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.290e-31
Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R KK+ +LR KG+  +   + R   +NQL + Y H +N E     N  V+           GK +F+T+RD  G IQLY     L ++ +D+     D+GDILG  G + RT  GELS+      +LTKSL PLPDK+HGL + + +YRQRY+D++        F+ R+ ++SEIR+ ++   F+EVETP++
Sbjct:   23 IRRKKLSKLREKGVA-FPNNFRRNSISNQLHKKYAHTSNVELIQL-NIEVTIAGRIISQRIMGKASFITIRDAEGCIQLYITSNSLATNLYDENIKQWDLGDILGARGILFRTRTGELSIYCKEIRLLTKSLRPLPDKFHGLNNQETKYRQRYLDLIINENTRKTFKIRSLVISEIRQFMKKNNFMEVETPMM 213          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ARCB4 (Lysyl-tRNA synthetase OS=Arcobacter butzleri (strain RM4018) GN=lysS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.290e-31
Identity = 68/193 (35.23%), Postives = 116/193 (60.10%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQL-KVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            RI+K  +LR  G+ PY+ +  R  + ++   +   +   EE   EN + +           GK +FL + D+SG +Q+Y  ++ L  + ++++ K  +++GDI+ +SG    T  GELS+  +S  ILTK++ PLP+K+HG+ D + RYRQRY+D++   EV   F  R+K++S  R+  E+ GF+EVETP++
Sbjct:   10 RIEKANKLREDGINPYSNESSRNCTISKYLNVNSDIFQLEEKRDENRNYTVAGRIKFFRLMGKASFLKIEDESGMLQIYVARDNLPENFYNEVFKKNIEVGDIIEISGYPFVTGHGELSLHADSLKILTKAISPLPEKFHGIQDKELRYRQRYLDLIMNSEVRKTFHIRSKVISLTRRFFENKGFLEVETPMM 202          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_EDWI9 (Lysyl-tRNA synthetase OS=Edwardsiella ictaluri (strain 93-146) GN=lysS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.213e-30
Identity = 75/193 (38.86%), Postives = 119/193 (61.66%), Query Frame = 1
Query:  229 RIKKVEELRSKGLE-PYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R +K+  LR +G+  P  ++ D T  +++L  +Y   +  EE  + N  VS           GK +F+TL+D  G IQLY  ++ L  D + +     D+GDI+G  G++ RT+ GELS+  +S  +LTK+L PLPDK+HGL+D + RYRQRY+D+++     + FR R+KI++ IR  + + GF+EVETP++
Sbjct:   22 RREKLAALRKEGIAFPNDFRRDTT--SDKLHSLYDGKSK-EELEALNVEVSVAGRMMTRRIMGKASFVTLQDMGGRIQLYVARDDLKDDVYSEQFKKWDLGDIIGARGTLFRTQTGELSIHCHSIHLLTKALRPLPDKFHGLSDQETRYRQRYLDLIANESSRETFRTRSKILAAIRNFMVNKGFMEVETPMM 211          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK2_METMA (Lysyl-tRNA synthetase 2 OS=Methanosarcina mazei GN=lysS2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.213e-30
Identity = 69/192 (35.94%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            ++ K+  + S+GL PY YK+++     ++ E +      E        V            GK+ F  L D +G +Q+   K  L  ++F+  K  VD GDI+GV G + RT++GE S+ V+ F +L+KSL  LP+K+HGL DV+ RYR+RY+D++   E  ++F  R+K++SEIR+ +    F+E ETP+L
Sbjct:   32 KLAKLNGVISQGLNPYPYKFEKDEDICEILEKFEDFEKNEGLT-----VRTAGRLYNIRKHGKMIFADLGDQAGRVQVLVRKGNLPDEEFEIFKNLVDSGDIIGVQGDLFRTKRGENSISVSEFSLLSKSLCALPEKFHGLKDVETRYRKRYLDLIVNAEKREIFVMRSKLISEIRRFLTDREFLEFETPIL 218          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BURXL (Lysyl-tRNA synthetase OS=Burkholderia xenovorans (strain LB400) GN=lysS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.585e-30
Identity = 79/200 (39.50%), Postives = 111/200 (55.50%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D   + A R +K+ ELR +G+  Y   +  TH A  LQ  Y H ++ E   +    V+           GK +F T+RD SG IQ +     +  + +D  K + D+GDI+   G + RT KGELSV      +L+KSL PLPDK+HGL+D + +YRQRYVD++  PE    F  R K +S IRK +    F+EVETP+L
Sbjct:   19 DDNKIIAERREKLRELREQGVA-YPNDFRPTHHAEDLQAQYEH-SDKEALEANPLEVAIAGRMMLKRVMGKASFATVRDGSGQIQFFITPADVGQETYDAFKKW-DMGDIVAARGVLFRTNKGELSVRCTELRLLSKSLRPLPDKFHGLSDQEMKYRQRYVDLIVTPETRKTFVARTKAISSIRKFMADADFMEVETPML 215          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_RALSO (Lysyl-tRNA synthetase OS=Ralstonia solanacearum GN=lysS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.070e-30
Identity = 77/200 (38.50%), Postives = 111/200 (55.50%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D   + A R +K+  LR +G+  Y   +  TH A  L   Y    +     + N  V+           GK +F T++D SG IQ Y  ++R+  D +   K + D+GDI+   G + RT KGELSV V    +L+KSL PLPDK+HGL D + +YRQRYVD++  PE  + FR R K ++ +R  +   GF+EVETP+L
Sbjct:   16 DDNQIMAERREKLAALRQQGVA-YPNDFCPTHHAADLHTRYSE-TDQPALEAANVEVALAGRMMLKRVMGKASFATVQDGSGQIQFYITRDRVGEDVYAAFKHW-DLGDIVAARGVLFRTNKGELSVQVQELRLLSKSLRPLPDKFHGLADQEMKYRQRYVDLIVSPETRNTFRARTKAIASLRHHMSDAGFMEVETPML 212          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_RALME (Lysyl-tRNA synthetase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=lysS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.070e-30
Identity = 76/200 (38.00%), Postives = 111/200 (55.50%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D   + A R +K++ LR +G+  +   +  TH A  L   Y          S  + VS           GK +F T++D SG IQ Y  ++++  D +   K + D+GDI+   G + RT KGELSV V    +L+K+L PLPDK+HGL D + +YRQRYVD++  PE    FR R + +S IR+ +   GF+EVETP+L
Sbjct:   20 DENKIIAERREKLQALRQQGVA-FPNDFQPTHQAGALHAQYGETDQATLEASPVE-VSIAGRMMLKRVMGKASFATVQDGSGQIQFYITRDKVGEDVYAAFKHW-DLGDIISARGELFRTNKGELSVQVRELRLLSKALRPLPDKFHGLADQETKYRQRYVDLIVSPETRSTFRARTQAISSIRRHMADAGFMEVETPML 216          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_CITK8 (Lysyl-tRNA synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lysS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.070e-30
Identity = 74/192 (38.54%), Postives = 116/192 (60.42%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R +K+  LR +G+ P+   + R H+++QL   +    N EE  + N  VS           GK +F+TL+D  G IQLY  ++ L    +++     D+GDILG  G + +T+ GELS+      +LTK+L PLPDK+HGL D + RYRQRY+D++S  E  + F+ R++I++ IR+ +   GF+EVETP++
Sbjct:   22 RREKLASLREQGI-PFPNDFRRDHTSDQLHADFDAKEN-EELEALNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQIMAGIRQFMVGRGFMEVETPMM 211          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK1_MYCPU4.170e-3136.00Lysyl-tRNA synthetase 1 OS=Mycoplasma pulmonis GN=... [more]
SYK_DICNV7.113e-3139.30Lysyl-tRNA synthetase OS=Dichelobacter nodosus (st... [more]
SYK_BLOPB9.290e-3138.34Lysyl-tRNA synthetase OS=Blochmannia pennsylvanicu... [more]
SYK_ARCB49.290e-3135.23Lysyl-tRNA synthetase OS=Arcobacter butzleri (stra... [more]
SYK_EDWI91.213e-3038.86Lysyl-tRNA synthetase OS=Edwardsiella ictaluri (st... [more]
SYK2_METMA1.213e-3035.94Lysyl-tRNA synthetase 2 OS=Methanosarcina mazei GN... [more]
SYK_BURXL1.585e-3039.50Lysyl-tRNA synthetase OS=Burkholderia xenovorans (... [more]
SYK_RALSO2.070e-3038.50Lysyl-tRNA synthetase OS=Ralstonia solanacearum GN... [more]
SYK_RALME2.070e-3038.00Lysyl-tRNA synthetase OS=Ralstonia metallidurans (... [more]
SYK_CITK82.070e-3038.54Lysyl-tRNA synthetase OS=Citrobacter koseri (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
back to top