CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM4 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9211) GN=lysS PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.419e-40
Identity = 93/205 (45.37%), Postives = 129/205 (62.93%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLS----DQ-----FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            ++  R++K + L+  G  PY  +++ TH A  LQ  ++ LANG+E   E   V            GKLAF TL D+SG+IQL+ EK  L      DQ     F QL   VD GD +GV+G ++RT++GELS+ V S+ +L KSL PLPDK+HGL+DV+KRYRQRYVD++  P+    FR RA +VS IR+ ++   F+E+ETPVL
Sbjct:    4 LKETRLEKAQVLKKLGNGPYGIRFEVTHKAAVLQVEHQDLANGQERQLE---VCVAGRVISRRVMGKLAFFTLSDESGSIQLFLEKATLEEHSDLDQESPGSFSQLTDLVDSGDWIGVNGILRRTDRGELSIKVFSWTMLCKSLQPLPDKWHGLSDVEKRYRQRYVDLIVNPQSRKTFRSRALMVSAIRRWLDERDFLEIETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM9 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=lysS PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.383e-40
Identity = 88/205 (42.93%), Postives = 130/205 (63.41%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK---------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K   L SKG   YA  +  +H+   L + + +L NG+E   E+  VS           GK+AF T+ D  G IQLY +K         ++LLS  F+ +K  VDIGD +GV G++K+T KGELS+ V  + +L+KSL PLPDK+HGLTD++KRYRQRY+D++  P   +VF+ RAK +S IR+ +++  F+E+ETP+L
Sbjct:    4 IREARLQKANSLVSKGFASYAESFSVSHTTKFLIQKFDYLENGQE---EDFSVSLAGRVMAKRVMGKIAFFTISDQEGQIQLYLDKRMINCNLENQKLLS--FEDIKEIVDIGDWIGVYGTIKKTNKGELSIKVEKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPHSKNVFKTRAKCISFIRQWLDNRNFLEIETPIL 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PROM2 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=lysS PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.868e-39
Identity = 87/205 (42.44%), Postives = 131/205 (63.90%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYC---------EKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            ++  R++K   L SKG   YA  +  +++ + L + + +L NG+E++     VS           GK+AF T+ D  G IQLY          EK++LLS  F+ +K  VDIGD +GV G++K+T KGELS+ V  + +L+KSL PLPDK+HGLTD++KRYRQRY+D++  P   +VF+ RAK +S IRK +++  F+E+ETP+L
Sbjct:    4 IKEARLQKARSLVSKGFASYAQSFKVSNTTSFLLQEFDYLENGQEADFS---VSVAGRVLAKRVMGKIAFFTISDQEGQIQLYLDKRIINLNLEKQKLLS--FEDIKEIVDIGDWIGVYGTIKKTNKGELSIKVEKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPHSKNVFKTRAKCISFIRKWLDNRNFLEIETPIL 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ENTFA (Lysyl-tRNA synthetase OS=Enterococcus faecalis GN=lysS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.434e-39
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+E LR +G++P+  ++DRTH++ +L E Y +    EE +  N  VS           GK  F  L+D  G IQ+Y  K+++  + ++  K   D+GD  GV+G + +T  GE++V   +  +LTK+L PLPDKYHGLT+V++RYRQRY+D++S  E  D F KR++I+SEIR+ ++  G+VEVETPVL
Sbjct:   18 VRREKMEALREEGIDPFGKRFDRTHNSAELHEQYDNHTK-EELSEMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKDQVGDEAYELFK-HADLGDFFGVTGQVMKTNTGEVTVKAQTITLLTKALRPLPDKYHGLTNVEQRYRQRYLDLISNKESFDRFMKRSQIISEIRRYLDGNGYVEVETPVL 208          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ANASK (Lysyl-tRNA synthetase OS=Anaeromyxobacter sp. (strain K) GN=lysS PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.025e-37
Identity = 88/202 (43.56%), Postives = 127/202 (62.87%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLAN--GEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +RE + A R+KK E LR+ G+ P+   W   H A+   E+ RH  +   EE   +    S          FGK AFL +RD S  +Q++ +K+R+    F+  K+ +DIGDI+G  G   RT+ GEL++   +F ILTK+  PLP+K+HGLTDV++RYRQRYVD+V  P V + F KRA+IVS IR+ +++ G++EVETP L
Sbjct:    9 EREII-AQRLKKAEALRALGVNPFGNGWQPRHLAD---ELLRHYGDQPAEEIAKDPGDWSLAGRVLAVRSFGKAAFLRVRDRSAELQVWVKKDRVGEQAFEVFKL-LDIGDIVGAEGPATRTKTGELTLEARTFTILTKATRPLPEKWHGLTDVEQRYRQRYVDLVVTPGVREAFVKRARIVSGIRRFLDARGYLEVETPTL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ANAD2 (Lysyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=lysS PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.025e-37
Identity = 88/202 (43.56%), Postives = 127/202 (62.87%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLAN--GEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +RE + A R+KK E LR+ G+ P+   W   H A+   E+ RH  +   EE   +    S          FGK AFL +RD S  +Q++ +K+R+    F+  K+ +DIGDI+G  G   RT+ GEL++   +F ILTK+  PLP+K+HGLTDV++RYRQRYVD+V  P V + F KRA+IVS IR+ +++ G++EVETP L
Sbjct:    9 EREII-AQRLKKAEALRALGVNPFGNGWQPRHLAD---ELLRHYGDQPAEEIAKDPGDWSLAGRVLAVRSFGKAAFLRVRDRSAELQVWVKKDRVGEQAFEVFKL-LDIGDIVGAEGPATRTKTGELTLEARTFTILTKATRPLPEKWHGLTDVEQRYRQRYVDLVVTPGVREAFVKRARIVSGIRRFLDARGYLEVETPTL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_CARHZ (Lysyl-tRNA synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=lysS PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.338e-37
Identity = 83/195 (42.56%), Postives = 127/195 (65.13%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVF--VDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R++K+ ELR  G+EPY  K++RTH+A ++ + +  L +          V            GK +F  ++D SG IQ+Y  +  L  D +   K+F  +DIGDI+GV+G + +T+KGE++V ++SF IL KSL PLP+K+HGLTDV+ RYRQRYVD++  PEV + F  R++IV  IR+ ++  GF+EVETP++
Sbjct:   12 VRLEKLSELRKMGIEPYGGKFERTHTAKEILDNFEQLVDKT--------VKIAGRIMAKRGHGKASFAHIQDMSGKIQIYARQNELGIDAY---KLFEKLDIGDIIGVTGHVFKTQKGEITVWLSSFEILAKSLRPLPEKWHGLTDVELRYRQRYVDLIVNPEVRETFILRSRIVKTIREFLDQKGFLEVETPMM 195          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACST (Lysyl-tRNA synthetase OS=Bacillus stearothermophilus GN=lysS PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.982e-37
Identity = 79/200 (39.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D+  VR  ++KK+EEL   G++P+  +++RTH A +L E+Y  L+  EE   +   V+           GK  F  ++D +G IQ+Y  ++ +   Q++  K+  D+GDI+GV G+M +T+ GELS+ V+S+  LTK+L PLP+KYHGL D+++RYRQRY+D++  PE    F  R+ I+  +R+ ++S G++EVETP++
Sbjct:    8 DQLRVRREKLKKIEEL---GVDPFGKRFERTHKAEELFELYGDLSK-EELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKIS-DLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMM 202          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ANADE (Lysyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lysS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.982e-37
Identity = 88/202 (43.56%), Postives = 126/202 (62.38%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLAN--GEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +RE + A R+KK E LR+ G+ P+   W   H A   +E+ RH  +   EE        S          FGK AFL +RD S  +Q++ +K+R+    F+  K+ +DIGDI+G  G   RT+ GEL++   +F ILTK+  PLP+K+HGLTDV++RYRQRYVD+V  P V + F KRA+IVS IR+ +++ G++EVETP L
Sbjct:    9 EREII-AQRLKKAEALRALGVNPFGNGWQPRHLA---EELLRHHGDQPAEEIAKAPGDWSLAGRVLAVRSFGKAAFLRVRDRSAELQVWVKKDRVGDQAFEVFKL-LDIGDIVGAEGPATRTKTGELTLEARTFTILTKATRPLPEKWHGLTDVEQRYRQRYVDLVVTPGVREAFVKRARIVSGIRRFLDARGYLEVETPTL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STAS1 (Lysyl-tRNA synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=lysS PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.643e-37
Identity = 81/194 (41.75%), Postives = 119/194 (61.34%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGE-ESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++EL   G++P+  K+DRT  A  L E +   +  E     E  HVS           GK  F  ++D SG IQ+Y  K+++  DQF  +    D+GDI+GV G M +T  GELSV   SF +LTK+L PLPDK+HGL D+++RYRQRY+D+++  +    F KR+KI+ E+R  +   GF+EVETP++
Sbjct:   11 VRRQKLQELYDLGIDPFGQKFDRTSMATPLHEDWDQFSKEELHEKEEESHVSIAGRLMTKRGKGKAGFAHVQDLSGQIQIYVRKDQVGEDQF-AIWNSADLGDIVGVEGVMFKTNTGELSVKAQSFTLLTKALRPLPDKFHGLQDIEQRYRQRYLDLITNQDSTQTFIKRSKILQEMRNYLNQQGFLEVETPMM 203          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_PROM46.419e-4045.37Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_PROM98.383e-4042.93Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_PROM21.868e-3942.44Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_ENTFA5.434e-3942.49Lysyl-tRNA synthetase OS=Enterococcus faecalis GN=... [more]
SYK_ANASK1.025e-3743.56Lysyl-tRNA synthetase OS=Anaeromyxobacter sp. (str... [more]
SYK_ANAD21.025e-3743.56Lysyl-tRNA synthetase OS=Anaeromyxobacter dehaloge... [more]
SYK_CARHZ1.338e-3742.56Lysyl-tRNA synthetase OS=Carboxydothermus hydrogen... [more]
SYK_BACST2.982e-3739.50Lysyl-tRNA synthetase OS=Bacillus stearothermophil... [more]
SYK_ANADE2.982e-3743.56Lysyl-tRNA synthetase OS=Anaeromyxobacter dehaloge... [more]
SYK_STAS16.643e-3741.75Lysyl-tRNA synthetase OS=Staphylococcus saprophyti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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