CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PEDPA (Lysyl-tRNA synthetase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=lysS PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.643e-37
Identity = 83/195 (42.56%), Postives = 124/195 (63.59%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFV--DIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++ELR KG++P+ ++++RTH A QL E Y  +   EE + +    +           GK+ F  L+D SG +QLY  K+ L  D +   KVF   DIGD LGV+G + +T+ GEL++ V     L+K+L PLPDK+HGL +V++ YRQRY+D+++  +  D FRKR KIVS +R+ ++   F EVETPVL
Sbjct:   15 VRREKMQELRDKGIDPFGHRFERTHLAAQLHEKYSDMTK-EELDEQGVVATIAGRMISKRGKGKVGFADLKDRSGKMQLYVRKDVLGEDVY---KVFKRSDIGDFLGVTGDVMKTDMGELTIKVTGLTFLSKALRPLPDKFHGLQNVEQIYRQRYLDLIANDDSMDRFRKRTKIVSAVRRYLDGNDFAEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNWW (Lysyl-tRNA synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=lysS PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.480e-36
Identity = 78/196 (39.80%), Postives = 124/196 (63.27%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            ++ +R++K+ EL+  G+EP+  +++R   A  ++E +  L        E   ++           GK  F  L D SG+IQLY  ++ L  ++++  K  +DIGDILG+ G + RT+KGE+S+ V     L+KSL PLP+K+HGL DV+ RYRQRYVD++  PEV +VF KR++I+ E+R  ++  GF+EVETP++
Sbjct:   11 LKKVRLEKLAELKEMGIEPFGRRFERDSMAQNIKEAFSEL--------EGKTIAIAGRIMSKRRHGKAGFANLADLSGSIQLYFRQDDLGPEKYELYKK-LDIGDILGIQGEVFRTQKGEISIHVRDLYYLSKSLTPLPEKWHGLKDVELRYRQRYVDLIVNPEVKEVFVKRSRIIKEMRNYLDDRGFLEVETPMM 197          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STAES (Lysyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lysS PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.297e-36
Identity = 75/194 (38.66%), Postives = 126/194 (64.95%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSEND-HVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++EL   G++P+ ++++R+ ++++L+E +   +  E    E++ HVS           GK  F  ++D  G IQ+Y  K+++  DQF+  K+  D+GDI+GV G M +T  GE+SV   SF +L+KSL PLPDK+HGL D+++RYRQRY+D+++  +    F  R+KI+ E+R  +   GF+EVETP++
Sbjct:   11 VRRQKLQELIDLGIDPFGHRFNRSSTSSELKEQWDQFSKEELHEKEDESHVSIAGRLMTKRGKGKAGFAHIQDLKGQIQIYVRKDQVGDDQFNIWKM-ADLGDIIGVEGVMFKTNTGEISVKAKSFTLLSKSLRPLPDKFHGLQDIEQRYRQRYLDLITNEDSTQTFINRSKIIQEMRNYLNKQGFLEVETPMM 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STAEQ (Lysyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=lysS PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.297e-36
Identity = 75/194 (38.66%), Postives = 126/194 (64.95%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSEND-HVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++EL   G++P+ ++++R+ ++++L+E +   +  E    E++ HVS           GK  F  ++D  G IQ+Y  K+++  DQF+  K+  D+GDI+GV G M +T  GE+SV   SF +L+KSL PLPDK+HGL D+++RYRQRY+D+++  +    F  R+KI+ E+R  +   GF+EVETP++
Sbjct:   11 VRRQKLQELIDLGIDPFGHRFNRSSTSSELKEQWDQFSKEELHEKEDESHVSIAGRLMTKRGKGKAGFAHIQDLKGQIQIYVRKDQVGDDQFNIWKM-ADLGDIIGVEGVMFKTNTGEISVKAKSFTLLSKSLRPLPDKFHGLQDIEQRYRQRYLDLITNEDSTQTFINRSKIIQEMRNYLNKQGFLEVETPMM 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACHD (Lysyl-tRNA synthetase OS=Bacillus halodurans GN=lysS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.306e-36
Identity = 81/194 (41.75%), Postives = 120/194 (61.86%), Query Frame = 1
Query:  223 ALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            A+R +K++ L ++G  P+  K++RT +A  ++E Y    + EE   E   V            GK  F  ++D +G IQ+Y  K+ +    +D L   +DIGDI+GV G   +T+ GELSV V  F +LTKSL PLPDKYHGL DV++RYRQRY+D++  PEV D F  R+KI+  +R+ ++  G++EVETP +
Sbjct:   12 AVRREKLQNLEAEGANPFGGKFERTDTAQSMKEKY-DAKSKEELEEETHEVVLAGRVMTKRGKGKAGFAHIQDLTGQIQIYVRKDAVGDKSYD-LFTSIDIGDIVGVKGVAFKTKVGELSVKVQDFQLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLIVNPEVRDTFVLRSKILQSMRRYLDDRGYLEVETPTM 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACCN (Lysyl-tRNA synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=lysS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.306e-36
Identity = 73/193 (37.82%), Postives = 123/193 (63.73%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  LR +G++P+  +++RTHS+ +L  +Y   +  EE   +   VS           GK  F  ++D  G +Q+Y  K+ +  ++++  K   D+GD++G+ G + +T  GELSV   SF +LTKSL PLPDKYHGL D+++RYRQRY+D+++  E  + F  R+KI+ E+R+ ++  G++EVETP++
Sbjct:   15 VRREKLHNLREQGIDPFGKRFERTHSSKELLNLYGEFSK-EELEEKAISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYVRKDAVGDEEYELFKT-ADLGDLVGIEGKVFKTNVGELSVKATSFTLLTKSLRPLPDKYHGLKDIEQRYRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMM 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_THEMA (Lysyl-tRNA synthetase OS=Thermotoga maritima GN=lysS PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.623e-36
Identity = 76/192 (39.58%), Postives = 122/192 (63.54%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+K+++ELRS G+EPY YK+++  +A +++E Y +L  GE   SE   +S           GK AF  ++DD+G IQ Y + + +  ++ D  K  V IGD +GV G   +++ GEL++ V  + +L+K+L PLP+K+HG+ D +  YRQRY++++   E  + F+KR K V  IR+ + S GF+EVETP+L
Sbjct:    9 RLKEIQELRSMGIEPYPYKFEKELTAREIREKYDYLQAGEVLESEK--LSFAGRVMSIRHHGKTAFFHMKDDTGRIQAYIKADSVGKEKMDLFKRHVKIGDFVGVRGFPFKSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQRYLELIVNDEAIERFKKRFKAVRVIREFLNSRGFIEVETPIL 198          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_THESQ (Lysyl-tRNA synthetase OS=Thermotoga sp. (strain RQ2) GN=lysS PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.344e-36
Identity = 76/192 (39.58%), Postives = 120/192 (62.50%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+ +++ELRS G+EPY YK+++  +A +++E Y +L  GE   SE   +S           GK AF  ++DD+G IQ Y   + +  ++ D  K  V IGD +GV G   +++ GEL++ V  + +L+K+L PLP+K+HG+ D +  YRQRY++++   E  + FRKR K V  IR+ + S GF+EVETP+L
Sbjct:    9 RLNEIQELRSMGIEPYPYKFEKELTAREIREKYDYLQAGEVLESEK--LSFAGRVMSIRHHGKTAFFHMKDDTGRIQAYVRADSVGKEKMDLFKRHVKIGDFIGVRGFPFKSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQRYLELIVSDEAIERFRKRFKAVQVIREFLNSRGFIEVETPIL 198          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_THEP1 (Lysyl-tRNA synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=lysS PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.344e-36
Identity = 76/192 (39.58%), Postives = 120/192 (62.50%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+ +++ELRS G+EPY YK+++  +A +++E Y +L  GE   SE   +S           GK AF  ++DD+G IQ Y   + +  ++ D  K  V IGD +GV G   +++ GEL++ V  + +L+K+L PLP+K+HG+ D +  YRQRY++++   E  + FRKR K V  IR+ + S GF+EVETP+L
Sbjct:    9 RLNEIQELRSMGIEPYPYKFEKELTAREIREKYDYLQAGEVLESEK--LSFAGRVMSIRHHGKTAFFHMKDDTGRIQAYVRADSVGKEKMDLFKRHVKIGDFIGVRGFPFKSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQRYLELIVSDEAIERFRKRFKAVQVIREFLNSRGFIEVETPIL 198          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_FERNB (Lysyl-tRNA synthetase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=lysS PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.344e-36
Identity = 75/195 (38.46%), Postives = 120/195 (61.54%), Query Frame = 1
Query:  220 RALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R  RIK+++ELR+ G+ PY Y +++TH+   +++ + HL+NGE ++     VS           GK AF  ++D  G IQ Y  K++  ++ ++  K  V +GDI+GV G + ++  GE+++LV  F +L K L P+P+K+HG+ D +  YRQRYVDM++  E    FR R+ I+  IR+ +   GF EVETP+L
Sbjct:    6 REARIKEIDELRNLGINPYPYSYNKTHTTEDIKKQFEHLSNGEVTDKR---VSTAGRIMSIREHGKSAFFHIKDTYGRIQAYIRKDK--TENYEFFKERVTVGDIVGVEGIVFKSNTGEITILVEKFELLVKPLRPMPEKWHGIKDKEVLYRQRYVDMIANDETIKRFRMRSDIIRMIREFLTKKGFFEVETPIL 195          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_PEDPA6.643e-3742.56Lysyl-tRNA synthetase OS=Pediococcus pentosaceus (... [more]
SYK_SYNWW1.480e-3639.80Lysyl-tRNA synthetase OS=Syntrophomonas wolfei sub... [more]
SYK_STAES3.297e-3638.66Lysyl-tRNA synthetase OS=Staphylococcus epidermidi... [more]
SYK_STAEQ3.297e-3638.66Lysyl-tRNA synthetase OS=Staphylococcus epidermidi... [more]
SYK_BACHD4.306e-3641.75Lysyl-tRNA synthetase OS=Bacillus halodurans GN=ly... [more]
SYK_BACCN4.306e-3637.82Lysyl-tRNA synthetase OS=Bacillus cereus subsp. cy... [more]
SYK_THEMA5.623e-3639.58Lysyl-tRNA synthetase OS=Thermotoga maritima GN=ly... [more]
SYK_THESQ7.344e-3639.58Lysyl-tRNA synthetase OS=Thermotoga sp. (strain RQ... [more]
SYK_THEP17.344e-3639.58Lysyl-tRNA synthetase OS=Thermotoga petrophila (st... [more]
SYK_FERNB7.344e-3638.46Lysyl-tRNA synthetase OS=Fervidobacterium nodosum ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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