CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SHEWM (Lysyl-tRNA synthetase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=lysS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.449e-24
Identity = 71/203 (34.98%), Postives = 109/203 (53.69%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSK-GLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVF--VDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D   + A R  K+E +R+      +   +DR H A  +Q  +     G  +  E + +             +  FL ++D SG IQ Y  K+     Q D    F  +DIGDI+GV+G +  + KG+L V +  + +LTK+L PLP+K+HGLTD + RYRQRYVD++   +  + F  R+K+VS IR  +    F+EVETP++
Sbjct:    8 DENKLIAERRAKLEHIRANCPANGHPNNFDRKHKAADIQAEF-----GNNTKEELEGMGIQRSIAGRIMAKRGPFLVIQDVSGRIQAYAGKDV----QKDLKATFQGLDIGDIIGVTGQLHLSGKGDLYVNMEEYQLLTKALRPLPEKFHGLTDQETRYRQRYVDLIVNEDSRNAFIMRSKVVSAIRNFMVKKEFMEVETPMM 201          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCMO (Lysyl-tRNA synthetase OS=Mycoplasma mobile GN=lysS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.100e-23
Identity = 63/193 (32.64%), Postives = 110/193 (56.99%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+E+L+  G+E +        + N++ + Y   +  E +  E    +            + +FL L+      Q+Y   + L   ++ +L   +DIGDI+ V+G + +T+ GEL++  N   +L+KSL  LPDK+HGL D+++RYR RYVD++   +V   F  R++I+S IRK  ++L ++EV+TPVL
Sbjct:   11 IRRQKIEKLQKLGVEVFHETVKFDLNINKIIQKYNSFSKDELAKDEFSLSTTGRIITI-----RSSFLVLKSQGSKFQIYLPIKEL-DKKYLELIDLLDIGDIIFVNGKLMKTQTGELTLRANELKLLSKSLKVLPDKFHGLNDIEERYRHRYVDLIVNDDVRKTFLLRSRIISLIRKYFDNLEYLEVDTPVL 197          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SULSO (Lysyl-tRNA synthetase OS=Sulfolobus solfataricus GN=lysS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.437e-23
Identity = 65/192 (33.85%), Postives = 104/192 (54.17%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+K VEELR  G+EPY +K++ TH    ++ I +   N +       ++S           GK +F+ + D+   +QLY   + L  +++D+  ++V  GDI+GV G +  T KGELS+LV  + +L+K+L+  PD        + RY  RYVD +           R  I+ EIR+ + S GF+EVETP++
Sbjct:    9 RVKIVEELRKNGIEPYPHKYEVTHLIKDIKLIAKSQGN-KSHEPFMFNISTAGRVANIRRHGKASFVDIFDEGEKLQLYMRVDEL-KEKYDKFFIYVGRGDIIGVKGDLFYTMKGELSLLVKDYQLLSKALIEPPD--WSKLSPEFRYAHRYVDFLYNDNARKAMEIRYTIIREIREFLYSKGFIEVETPIV 196          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ONYPE (Lysyl-tRNA synthetase OS=Onion yellows phytoplasma GN=lysS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.437e-23
Identity = 64/193 (33.16%), Postives = 107/193 (55.44%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+ EL+   ++P+  K+  +HS  Q+   Y+  A+         HV            GK  FL L+D +  +Q Y + + +  D F Q+    D+GDI+G+ G + +T+  EL++    F+ LTK+L PLPDK+HGL + ++  + RYVD++   +   VF  R+ I+  IR   ++ GF+EVETP+L
Sbjct:   11 IRHQKMNELKKINIDPFGKKFVPSHSIEQILLQYQK-ADSLALEQSQIHVCVAGRIVLKRGQGKAGFLHLQDFNFRMQAYIKLDLVGKDAF-QIYQNCDLGDIIGIKGFLFKTKTQELTIKALEFIHLTKALKPLPDKFHGLQNREEMRKNRYVDLIVNEKTRQVFLTRSLIMKYIRNFFDNQGFLEVETPIL 201          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BUCBP (Lysyl-tRNA synthetase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lysS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.437e-23
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  412 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            GK +F  L+D  G IQLY ++     + + Q     D+GDILG  G + +T  GELS+      +LTK+L PLP K+HGL+D + RYRQRY+D++S   +  +F+ R+ I   IRK +    F+EVETP++
Sbjct:   68 GKSSFFILKDFEGEIQLYIQENLFALNFYKQFVKKWDLGDILGAKGKLFKTRTGELSIHCTEIKLLTKALKPLPSKFHGLSDQETRYRQRYLDLISNRTLCSIFKIRSLIFINIRKYMLKKKFLEVETPMM 198          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PHOPR (Lysyl-tRNA synthetase OS=Photobacterium profundum GN=lysS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.876e-23
Identity = 56/129 (43.41%), Postives = 87/129 (67.44%), Query Frame = 1
Query:  424 FLTLRDDSGTIQLYCEK--ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            FL ++D SG IQ Y +K  ++ L +++  L    DIGDI+GV G +  + KG+L V ++++ +LTK+L PLP+K+HGLTD + RYRQRYVD++   +  +    R+K+VS IR  +    F+EVETP++
Sbjct:   76 FLAIQDVSGRIQAYADKTVQKELKEKYSGL----DIGDIIGVKGQLHLSGKGDLYVTMDNYELLTKALRPLPEKFHGLTDQETRYRQRYVDLIVNEDSRNTMIMRSKVVSAIRNFMMKKDFMEVETPMM 200          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCFE (Lysyl-tRNA synthetase OS=Mycoplasma fermentans GN=lysS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.876e-23
Identity = 67/196 (34.18%), Postives = 106/196 (54.08%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPY--AYKWDRTHSANQLQEIYRHLANGE-ESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  K+E  +   + P+  AY   +  ++++L + Y   A  E E+     ++S            +  FL L+D  GTIQ+Y  K+   + +  ++    D+GDIL V G + +T   E++V      +LTK+L PLPDK+HGLTD ++RYR RY+D+++ PE  + F  R KIV  IR     L ++E ETP L
Sbjct:   10 IRRDKLEFYKKFDVVPFKKAYGLGKLSTSDELNKKYGQFAREELEAKKVKKNISGRLIT------ARGPFLVLKDRKGTIQVYFNKKE--NPELTKIVETFDLGDILWVRGLLMKTHTCEMTVRAQDIQLLTKALKPLPDKFHGLTDTEERYRHRYLDLITNPESRNTFIMRTKIVQWIRDYFNKLDYLEAETPFL 197          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_CHLCH (Lysyl-tRNA synthetase OS=Chlorobium chlorochromatii (strain CaD3) GN=lysS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.200e-23
Identity = 69/204 (33.82%), Postives = 107/204 (52.45%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTH-SANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDK-----------YHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            RI++ + L   G+ PY   ++ TH SA  L E           +     V+           GK +F  ++D +G IQ+Y +K+ +    ++  K+ +DIGDI+GV+G   RT+ GE+S+   S  +LTKSL P+P             +   +D + RYRQRYVD++  PEV + F KR  IV+ +R      G++EVETP+L
Sbjct:   27 RIEERQHLIDSGINPYPCSFNVTHHSATILTEF---------QDEAKTPVAVAGRIMTIRKMGKASFFNVQDSAGRIQIYLKKDDVGEAAYNMFKL-LDIGDIVGVTGYTFRTKTGEISIHAESLELLTKSLRPIPIAKEKEVDGEKVVFDAFSDKELRYRQRYVDLIVNPEVRETFIKRTAIVAAMRNFFARHGWLEVETPIL 220          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCHJ (Lysyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=lysS PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.180e-23
Identity = 55/116 (47.41%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  457 QLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            Q Y  KE    ++F  +   +D+GDI+ VSG + +T+ G+LS+ VN+F +LTKSL PLPD+Y+G+ + D++YR+RY+D++   E A  FR R+KI+S IR   +S GF+EV+TPVL
Sbjct:   84 QAYISKEFQKKNEF--IFANLDLGDIIEVSGYLFKTQTGQLSIKVNNFSLLTKSLHPLPDQYYGIENPDEKYRKRYLDLLVNSESAKTFRLRSKIISLIRTFFDSQGFLEVDTPVL 197          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCH7 (Lysyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain 7448) GN=lysS PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.180e-23
Identity = 55/117 (47.01%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  454 IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            IQ Y  K+    ++F  +   +D+GDI+ VSG + +T+ G+LS+ VN+F +LTKSL PLPD+Y+G+ + D++YR+RY+D++   E A  FR R+KI+S IR   +S GF+EV+TPVL
Sbjct:   83 IQAYISKKFQKKNEF--IFANLDLGDIIEVSGYLFKTQTGQLSIKVNNFSLLTKSLHPLPDQYYGIENPDEKYRKRYLDLLVNSESAKTFRLRSKIISLIRTFFDSQGFLEVDTPVL 197          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_SHEWM6.449e-2434.98Lysyl-tRNA synthetase OS=Shewanella woodyi (strain... [more]
SYK_MYCMO1.100e-2332.64Lysyl-tRNA synthetase OS=Mycoplasma mobile GN=lysS... [more]
SYK_SULSO1.437e-2333.85Lysyl-tRNA synthetase OS=Sulfolobus solfataricus G... [more]
SYK_ONYPE1.437e-2333.16Lysyl-tRNA synthetase OS=Onion yellows phytoplasma... [more]
SYK_BUCBP1.437e-2341.98Lysyl-tRNA synthetase OS=Buchnera aphidicola subsp... [more]
SYK_PHOPR1.876e-2343.41Lysyl-tRNA synthetase OS=Photobacterium profundum ... [more]
SYK_MYCFE1.876e-2334.18Lysyl-tRNA synthetase OS=Mycoplasma fermentans GN=... [more]
SYK_CHLCH3.200e-2333.82Lysyl-tRNA synthetase OS=Chlorobium chlorochromati... [more]
SYK_MYCHJ4.180e-2347.41Lysyl-tRNA synthetase OS=Mycoplasma hyopneumoniae ... [more]
SYK_MYCH74.180e-2347.01Lysyl-tRNA synthetase OS=Mycoplasma hyopneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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