CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_CHLTA (Lysyl-tRNA synthetase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=lysS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.539e-22
Identity = 69/209 (33.01%), Postives = 111/209 (53.11%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSE------NDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKE-----RLLSD------QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R  K++E+R  G+ PY Y++       ++QEI     + E  +SE         V            GK +F  + D+   IQ+   ++      L +D      +F + K+  D+GDILG+ G +  T  GEL+VLV +  +L KSL+ LPDK+ GL D + RYR+R+ D++S  +V   F  R++I+  IR+ ++   F+EVETP+L
Sbjct:   16 RTSKLKEIRDLGINPYPYQYT---DCLEVQEIRNQFVDNELGDSEAAFRKETPKVRFAGRLVLFRSMGKNSFGQILDNDAKIQVMFNRDFSAVAGLAADAGISPIKFIEKKL--DLGDILGLEGYLFFTHSGELTVLVETVTLLCKSLISLPDKHAGLADKEIRYRKRWADLISSEDVRKTFLTRSRILKLIREYMDQQSFLEVETPIL 219          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCTA (Lysyl-tRNA synthetase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=lysS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGT-IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  K   L ++G +PY     RTH+  +++  +  L       +  D V            GKL F TL+D  GT +Q+    +++     D  K  VD+GDI+ V G++  + +GELSVL + + I  KSL PLP  +  +++ + R RQRYVD++ +PE   V R R  +V  IR  ++  GF+EVETPVL
Sbjct:   16 IRRDKRARLLAQGRDPYPVAVPRTHTLAEVRAAHPDLPI---DTATEDIVGVAGRVIFARNSGKLCFATLQDGDGTQLQVMISLDKVGQAALDAWKADVDLGDIVYVHGAVISSRRGELSVLADCWRIAAKSLRPLPVAHKEMSE-ESRVRQRYVDLIVRPEARAVARLRIAVVRAIRTALQRRGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCBT (Lysyl-tRNA synthetase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=lysS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGT-IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  K   L ++G +PY     RTH+  +++  +  L       +  D V            GKL F TL+D  GT +Q+    +++     D  K  VD+GDI+ V G++  + +GELSVL + + I  KSL PLP  +  +++ + R RQRYVD++ +PE   V R R  +V  IR  ++  GF+EVETPVL
Sbjct:   16 IRRDKRARLLAQGRDPYPVAVPRTHTLAEVRAAHPDLPI---DTATEDIVGVAGRVIFARNSGKLCFATLQDGDGTQLQVMISLDKVGQAALDAWKADVDLGDIVYVHGAVISSRRGELSVLADCWRIAAKSLRPLPVAHKEMSE-ESRVRQRYVDLIVRPEARAVARLRIAVVRAIRTALQRRGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCBP (Lysyl-tRNA synthetase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=lysS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGT-IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  K   L ++G +PY     RTH+  +++  +  L       +  D V            GKL F TL+D  GT +Q+    +++     D  K  VD+GDI+ V G++  + +GELSVL + + I  KSL PLP  +  +++ + R RQRYVD++ +PE   V R R  +V  IR  ++  GF+EVETPVL
Sbjct:   16 IRRDKRARLLAQGRDPYPVAVPRTHTLAEVRAAHPDLPI---DTATEDIVGVAGRVIFARNSGKLCFATLQDGDGTQLQVMISLDKVGQAALDAWKADVDLGDIVYVHGAVISSRRGELSVLADCWRIAAKSLRPLPVAHKEMSE-ESRVRQRYVDLIVRPEARAVARLRIAVVRAIRTALQRRGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MOUSE (Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 63/194 (32.47%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ-FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R + V++L+  G +PY +K+    S  Q  + Y HL  G+        V+           GKL F  LR +   +Q+        S++ F  +   +  GDI+GV G+  +T+KGELS++     +L+  L  LP  + GL D + RYRQRY+D++    V   F  R+KI++ IR  ++ LGF+E+ETP++
Sbjct:   77 IRSQAVQQLKVTGEDPYPHKFHVDISLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKRASG-GKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMM 269          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACTN (Lysyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=lysS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 63/206 (30.58%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGE-ESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQL-----KVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPD-------KYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R   + ELR+ G++PY        +A  +   +      E +   E   VS           GK +F+ L+D  G IQ+Y  ++ +   +  +L     K  +D+GD +G+ G + RT+ GE+S+      +L KS+ PLP         Y    D + RYRQRYVD+V    + + F KRA +V  +R  ++  G+ EVETP+L
Sbjct:   12 IRRNSLNELRAMGIDPYP-------AAEYVTNAFSTDIKAEFKDEDEPRQVSVAGRIMSRRVMGKASFIELQDSKGRIQVYITRDDICPGEDKELYNSVFKRLLDLGDFVGIEGFVFRTQMGEISIHAKKLTVLAKSIKPLPIVKYKDGVAYDSFEDPELRYRQRYVDLVVNEGIKETFEKRATVVRTLRNALDEAGYTEVETPIL 210          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK1_MYCTU (Lysyl-tRNA synthetase 1 OS=Mycobacterium tuberculosis GN=lysS1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGT-IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  K   L ++G +PY     RTH+  +++  +  L       +  D V            GKL F TL+D  GT +Q+    +++     D  K  VD+GDI+ V G++  + +GELSVL + + I  KSL PLP  +  +++ + R RQRYVD++ +PE   V R R  +V  IR  ++  GF+EVETPVL
Sbjct:   16 IRRDKRARLLAQGRDPYPVAVPRTHTLAEVRAAHPDLPI---DTATEDIVGVAGRVIFARNSGKLCFATLQDGDGTQLQVMISLDKVGQAALDAWKADVDLGDIVYVHGAVISSRRGELSVLADCWRIAAKSLRPLPVAHKEMSE-ESRVRQRYVDLIVRPEARAVARLRIAVVRAIRTALQRRGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK1_MYCBO (Lysyl-tRNA synthetase 1 OS=Mycobacterium bovis GN=lysS1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGT-IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  K   L ++G +PY     RTH+  +++  +  L       +  D V            GKL F TL+D  GT +Q+    +++     D  K  VD+GDI+ V G++  + +GELSVL + + I  KSL PLP  +  +++ + R RQRYVD++ +PE   V R R  +V  IR  ++  GF+EVETPVL
Sbjct:   16 IRRDKRARLLAQGRDPYPVAVPRTHTLAEVRAAHPDLPI---DTATEDIVGVAGRVIFARNSGKLCFATLQDGDGTQLQVMISLDKVGQAALDAWKADVDLGDIVYVHGAVISSRRGELSVLADCWRIAAKSLRPLPVAHKEMSE-ESRVRQRYVDLIVRPEARAVARLRIAVVRAIRTALQRRGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SULAC (Lysyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=lysS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 64/192 (33.33%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+K V+EL+SKG+ PY +K+D TH+   ++++ R   + + +++    +S           GK++F+ + D+   +QL      L  D++D+    VD GDILGV G +  T KGEL++ +  +V+L+KSL+  PD        + RY  RYVD +           R   +  IR+ + S GF+EVETP+L
Sbjct:   15 RVKIVDELKSKGINPYPHKYDITHTIIDIKKMER---SDKPTDAFAFDISTAGRVANIRRHGKISFVDIFDEGERLQLQLRVNEL-GDRYDKFFEIVDRGDILGVKGDLLYTIKGELTLRIKDYVLLSKSLIEPPD--WSKLSPEFRYAHRYVDFLYNDLARRNMEIRYSTIRRIREFLYSKGFMEVETPIL 200          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_DEIRA (Lysyl-tRNA synthetase OS=Deinococcus radiodurans GN=lysS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 67/200 (33.50%), Postives = 100/200 (50.00%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIY--RHLANGEESNSE------NDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+  ++     G E Y Y + +TH A  +   +  R    GE    E       +  S           GK AF  L D+ G IQL+  K+      FD  K  +D+GDI+GV G    T+ G+L++ V  +  L KSL PLP K+HGL D + R R+RYVD++      + F+ R++++  IR  ++  GF+EVE P L
Sbjct:   20 RLNNLDAQVDAGFEAYPYSYPQTHHARDVFAAHPAREEGTGEGGTLEPGQKWEEESYSLAGRVTLMRHMGKAAFADLSDEDGKIQLFFSKQDTAG--FDATKK-IDLGDIIGVKGHPFVTKTGQLTLHVTEWQPLVKSLHPLPSKFHGLQDEELRARRRYVDLMVTEGAREKFQARSRMIRYIRNELDERGFMEVEGPTL 216          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_CHLTA3.539e-2233.01Lysyl-tRNA synthetase OS=Chlamydia trachomatis (st... [more]
SYK_MYCTA4.621e-2235.05Lysyl-tRNA synthetase OS=Mycobacterium tuberculosi... [more]
SYK_MYCBT4.621e-2235.05Lysyl-tRNA synthetase OS=Mycobacterium bovis (stra... [more]
SYK_MYCBP4.621e-2235.05Lysyl-tRNA synthetase OS=Mycobacterium bovis (stra... [more]
SYK_MOUSE4.621e-2232.47Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1... [more]
SYK_BACTN4.621e-2230.58Lysyl-tRNA synthetase OS=Bacteroides thetaiotaomic... [more]
SYK1_MYCTU4.621e-2235.05Lysyl-tRNA synthetase 1 OS=Mycobacterium tuberculo... [more]
SYK1_MYCBO4.621e-2235.05Lysyl-tRNA synthetase 1 OS=Mycobacterium bovis GN=... [more]
SYK_SULAC7.883e-2233.33Lysyl-tRNA synthetase OS=Sulfolobus acidocaldarius... [more]
SYK_DEIRA7.883e-2233.50Lysyl-tRNA synthetase OS=Deinococcus radiodurans G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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