CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_CAEEL (Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 63/195 (32.31%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFG-KLAFLTLRDDSGTIQLYCEKERLLSD-QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R++ +E  R+ G  P+ +K++ T S       Y  L   E+     + VS           G KL F  +  +   IQ+    +    D  F  L   +  GDI+G +G   RT+ GELS++ N  + LT  L  LP  + GL D + R+R+RY+D++  P V D F  R+KI++ +R+ +++LGF+EVETP++
Sbjct:   59 MRVRMIEARRAAGDNPFPHKFNVTISLTDFITKYTPL---EKEQVVEEIVSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFVIRSKIITFLRRYLDNLGFLEVETPIM 250          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ARATH (Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 64/215 (29.77%), Postives = 108/215 (50.23%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDI--GDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHG---------------------LTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+K +   ++KG  PY +K+  + S  +  E Y  L NG+   +  + ++            KL F  L  D   +Q+  +  +   D+ + LK+  +   GDI+GV G   +T++GELS+   SF++L+  L  +P K                        L D + RYRQR++DM+   EV  +FR RAKI+S +R+ +++  F+EVETP++
Sbjct:   94 RLKYLAAEKAKGENPYPHKFAVSMSIPKYIETYGSLNNGDHVENAEESLAGRIMSKRSSS-SKLFFYDLHGDDFKVQVMADASKSGLDEAEFLKLHSNAKRGDIVGVIGFPGKTKRGELSIFPRSFILLSHCLHMMPRKADNVNAKKPEIWVPGQTRNPEAYVLKDQESRYRQRHLDMILNVEVRQIFRTRAKIISYVRRFLDNKNFLEVETPMM 307          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK2_MYCTU (Putative lysyl-tRNA synthetase 2 OS=Mycobacterium tuberculosis GN=lysS2 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 61/198 (30.81%), Postives = 104/198 (52.53%), Query Frame = 1
Query:  211 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            E VR +R  K+E+LRS G++ +      +H+  Q       LA   +++     VS          +G + F  LRD SG +Q+  +  RL            D+GD++ ++G M  ++ G  S++V+ + ++ K L PLP+K+ GL D + R R RY+D+    E   +   R+ ++  +R+T+ + GFVEVETP+L
Sbjct:  684 EQVR-VRFDKLEKLRSSGIDAFPVGRPPSHTVAQA------LAADHQAS-----VSVSGRIMRIRNYGGVLFAQLRDWSGEMQVLLDNSRLDQGCAADFNAATDLGDLVEMTGHMGASKTGTPSLIVSGWRLIGKCLRPLPNKWKGLLDPEARVRTRYLDLAVNAESRALITARSSVLRAVRETLFAKGFVEVETPIL 869          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK2_MYCBO (Putative lysyl-tRNA synthetase 2 OS=Mycobacterium bovis GN=lysS2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 61/198 (30.81%), Postives = 104/198 (52.53%), Query Frame = 1
Query:  211 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            E VR +R  K+E+LRS G++ +      +H+  Q       LA   +++     VS          +G + F  LRD SG +Q+  +  RL            D+GD++ ++G M  ++ G  S++V+ + ++ K L PLP+K+ GL D + R R RY+D+    E   +   R+ ++  +R+T+ + GFVEVETP+L
Sbjct:  684 EQVR-VRFDKLEKLRSSGIDAFPVGRPPSHTVAQA------LAADHQAS-----VSVSGRIMRIRNYGGVLFAQLRDWSGEMQVLLDNSRLDQGCAADFNAATDLGDLVEMTGHMGASKTGTPSLIVSGWRLIGKCLRPLPNKWKGLLDPEARVRTRYLDLAVNAESRALITARSSVLRAVRETLFAKGFVEVETPIL 869          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SOLLC (Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.065e-18
Identity = 69/226 (30.53%), Postives = 101/226 (44.69%), Query Frame = 1
Query:  223 ALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSD--QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLP-------------DKYHGLT-------------------DVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETP 798
            A R++ +E LR  G+ PY +K+  T S  +    Y HL  GE    + D               KL F  L      +Q+         D  QF   +  V  GDI+GV G   ++++GELS+    F++L   L  LP               + G+T                   D + RYRQRY+D++  PEV  +FR RA+I+S IR  +++L F+EVETP
Sbjct:   59 ANRLRNIESLRESGINPYPHKFFITMSIPEFISRYAHLNTGEFPE-DIDMSLAGRVISKRASSSKLYFYELLGGGARVQVLASARDSDVDAVQFSNYQSGVKRGDIIGVRGYPGKSKRGELSIFAKPFIVLAPCLHMLPRRLTSSIVDETRTQNFQGITAYDTWTPGDLRNPESYVLRDQETRYRQRYLDLMMNPEVRALFRTRARIISYIRSFLDNLEFLEVETP 283          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MYCGA (Lysyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=lysS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.100e-18
Identity = 59/200 (29.50%), Postives = 102/200 (51.00%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D+E VR  ++ ++ E +    E    K   TH+   L+E Y   +  + +  + D               +  F+ ++D    +QLY  K +   D F     ++D+GD++  +G   +T   ELS+ + S  I++KSL   P+K+HG+ D + R R+RY+D+V   E  + F  R+KI++ +R+     GF+EVETP L
Sbjct:   11 DQELVRLDKLNRLIESKQNPYE--VTKVANTHNTKSLKEKYDQFSKEQLAEMQLDKPITVSGRVILI---RRTFILIQDFHSELQLYINKNKQ-PDLFKYFNDYLDLGDVVCATGKPMKTNTNELSLDLESLKIISKSLRVPPEKFHGIADEEIRSRKRYLDLVYNKESKERFVYRSKIIAAMRQYFNENGFLEVETPFL 204          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYKC_YEAST (Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=KRS1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = 1
Query:  229 RIKKVEELR-SKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQL------YCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTE-----KGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R ++++ELR +    PY +K+  + S  +    Y HL  GE    E   ++            KL F  L  D   +QL      YC+ +    D  D LK     GDI+GV G + RT+     +GE+SV V+   +LT  L  LP  + G  D + RYR+RY+D++   +  + F  R++I+  IR+ ++   F+EVETP++
Sbjct:   77 RSRQIQELRKTHEPNPYPHKFHVSISNPEFLAKYAHLKKGETLPEEKVSIAGRIHAKRESG-SKLKFYVLHGDGVEVQLMSQLQDYCDPDSYEKDH-DLLKR----GDIVGVEGYVGRTQPKKGGEGEVSVFVSRVQLLTPCLHMLPADHFGFKDQETRYRKRYLDLIMNKDARNRFITRSEIIRYIRRFLDQRKFIEVETPMM 274          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYKC_SCHPO (Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=krs1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 59/198 (29.80%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  229 RIKKVEELR-SKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEK-----GELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R + + ELR +K   PY +K+  T +  +    Y  LA GE +  E +               KL F  +  D   +Q+ C+ +   +  F      +  GDI+G+ G   R+       GELS+     V+L+  L  LP +++GL D++ R+RQRY+D++      D F  R++I+  IR   +S  F+EVETP++
Sbjct:   79 RSRTIMELRQTKDPNPYPHKFQVTITLPEFIAKYEGLARGE-TKPEVEVAVAGRVLGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVDFAAQHEHLRRGDIIGIRGYPGRSNPKGRADGELSIFARQCVLLSPCLRMLPKEHYGLKDLEIRHRQRYLDLIMNRSTRDRFVMRSRIIQYIRHFFDSRDFMEVETPMM 275          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ORYSJ (Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 59/215 (27.44%), Postives = 106/215 (49.30%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKE--RLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLP---------------------DKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+K ++ L++ G+ PY +K+    +     E Y+ +  G++     + ++            KL F  L      +Q++ +     L  ++F +    +  GDI+GV G   ++++GELS+     V+L+  L  +P                     +KY  L D + RYRQRY+D++   EV  +F+ R+K+VS IRK ++ L F+EVETP++
Sbjct:   86 RLKALDSLKATGVNPYPHKFLANITVADYIEKYKSMNVGDKLVDVTECLAGRIMTKRAQS-SKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLHMMPRQKSEGSAVPTPWAPGMGRNIEKYV-LRDQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFIRKFLDGLDFLEVETPMM 298          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYKC_ENCCU (Probable lysyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU04_0580 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  499 DQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +Q+  F+  GD++G +G+  RT   E SV     ++LT  L  +P ++ GL D +  YR+RY+D++   E  + F+KRA+I+  IR  ++S GF+EVETP++
Sbjct:   33 EQMAKFLRRGDVVGFTGNPGRTRTLEASVFATDIIVLTPCLRTIPTEHFGLKDPETIYRKRYMDLLINRESRNRFQKRAQIIGYIRSFLDSRGFLEVETPMM 134          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_CAEEL7.378e-2032.31Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN... [more]
SYK_ARATH1.644e-1929.77Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=A... [more]
SYK2_MYCTU4.782e-1930.81Putative lysyl-tRNA synthetase 2 OS=Mycobacterium ... [more]
SYK2_MYCBO4.782e-1930.81Putative lysyl-tRNA synthetase 2 OS=Mycobacterium ... [more]
SYK_SOLLC1.065e-1830.53Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=L... [more]
SYK_MYCGA3.100e-1829.50Lysyl-tRNA synthetase OS=Mycoplasma gallisepticum ... [more]
SYKC_YEAST1.302e-1631.37Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyce... [more]
SYKC_SCHPO2.901e-1629.80Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccha... [more]
SYK_ORYSJ8.442e-1627.44Lysyl-tRNA synthetase OS=Oryza sativa subsp. japon... [more]
SYKC_ENCCU1.219e-1438.24Probable lysyl-tRNA synthetase, cytoplasmic OS=Enc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
back to top