CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYKC_ENTBH (Probable lysyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_25548 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 50/194 (25.77%), Postives = 95/194 (48.97%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDI--GDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R ++++EL+S G+  Y +K+   +  N  Q+++        +   N  V                F  ++ D+  +Q+   K     +    +K+   I  GDI+G  G + RT+ GE+SV  +   IL+  L   P + + +T+ +  YR R++D++   +  + F  R+KI+  IR+    +GF+EVETP++
Sbjct:   19 RREQMQELQSLGINVYPHKF---YFNNTFQDVFTAAETCSSNEKTNISVELVGRVIRARIHSMTNFYDVKKDNDELQIVYNKNLQGKENPIAIKIVDCIRRGDIIGFKGIVGRTKTGEISVFAHEIQILSPCLRAFPSEKNLITNPELIYRHRHIDLLVNQDSRNRFITRSKIIQHIREYFNKIGFLEVETPIM 209          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYKC_NOSCE (Probable lysyl-tRNA synthetase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100909 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 56/193 (29.02%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLS-DQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+  V E     ++ Y +K++  +   + ++I+    +  E + +   V             + +F  +  +  TIQL  + + L + D    +K     GDI+G SG + RT+  E SV +    ILT  L  +P  Y+GL D +  YR+RY+D++   E  + F +R  I+  IRK ++   FVEVETP+L
Sbjct:   21 RLLTVTEQLKDNVQVYPHKYEVNY---RFKDIFT-FKDASEEDLKKVKVQSAGRILNFRIHARYSFFQVMSEDFTIQLVVDAQVLENKDIISNIKR----GDIVGFSGVLGRTKTKEFSVFIKELSILTPCLRTIPTDYYGLKDPEIIYRKRYLDLLINKESKNRFIQRTNIIKFIRKYLDDKDFVEVETPLL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYD_META3 (Aspartyl-tRNA synthetase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=aspS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 48/177 (27.12%), Postives = 86/177 (48.59%), Query Frame = 1
Query:  286 WDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGE--LSVLVNSFVILTKSLLPLP-DKYHGLT-DVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            W RTH ++++            S  +   +            GKL F+ LRD  GTIQ+   K+++  + F   K  +   D++ + G +   EK      V+     IL K+  PLP D    ++ D+D R  +R++D+  +P++  +F+ R++++  IR T    GF++V+TP L
Sbjct:    7 WRRTHYSSEVN-----------SEMDGQEIIIMGWNHSIRKLGKLVFIILRDREGTIQIVAPKQKVSEETFATAKS-LGKEDVMAIKGKVVANEKAPAGFEVIPIEIKILNKADTPLPLDPSEKVSADIDTRLDKRFLDL-RRPKIQSLFKLRSEVLKSIRNTFHDNGFIDVDTPKL 170          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYKM_SCHPO (Lysyl-tRNA synthetase, mitochondrial OS=Schizosaccharomyces pombe GN=msk1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = 1
Query:  415 KLAFLTLRDDSGTIQLYCEKERLLSDQ------FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFV-ILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            KLAF  +   +  +Q+   K+ + +++        +LK  +  GD +  SG++ R+  GELS+       +L+  L P+P K   LT+ +KR+ +R+VDM+S  +  ++  KR +I+  IRK     GF+EVETP+L
Sbjct:   99 KLAFFDVLYGNKKLQVVFNKKNIGTEEEMKGKFIPRLKA-LQKGDCIQCSGNVGRSGSGELSIYATELPKLLSPCLHPIPVK---LTNYEKRFEKRFVDMMSNTKSLELLEKRYRIIESIRKFFSERGFLEVETPIL 231          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYD_METJA (Aspartyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=aspS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 47/178 (26.40%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  283 KWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKG----ELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            KW RTH +  ++              +   V            GK+ F+ LRD  GT+Q+   K+++  + F Q+K  +   D++ V G +   EK     E+  L    +   K  LPL        ++D R   R++D+  +P+V  +F+ R++++  +R T+ + GF+EV TP L
Sbjct:    6 KWRRTHYSADIKP-----------EMDGQEVIIMGWVHSIRALGKIIFVILRDREGTVQIVAPKQKVGDELFSQIKK-LGAEDVIAVKGKVIANEKAPNGFEILPLELEVINTAKRPLPLDPAEKVPAELDTRLENRFLDL-RRPKVQAIFKIRSEMLKSVRNTLYNEGFIEVNTPKL 170          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYD_METMP (Aspartyl-tRNA synthetase OS=Methanococcus maripaludis GN=aspS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 45/135 (33.33%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  412 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGE--LSVLVNSFVILTKSLLPLP-DKYHGLT-DVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            GKLAF+ LRD +GTIQ    K+++  + F+  K  +   DI+ + G +   EK      V+     +L K+  PLP D    ++ ++D R  +R++D + +P++  +F+ R++++  IRKT    GF+EV TP L
Sbjct:   38 GKLAFVILRDRAGTIQAVVPKQKVDEETFEIAKK-LGKEDIVAIKGKVVANEKAPKGFEVIPIEIRVLNKADAPLPLDPSEKVSAEIDTRLDKRFLD-IRRPKIQAIFKIRSEMLKSIRKTFADEGFIEVNTPKL 170          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYD_METM7 (Aspartyl-tRNA synthetase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=aspS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  412 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGE--LSVLVNSFVILTKSLLPLP-DKYHGL-TDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            GKLAF+ LRD  GTIQ    K+++  + F+  K  +   DI+ + G +   EK      V+     +L K+  PLP D    +  ++D R  +R++D + +P++  +F+ R++++  IRKT    GFVEV TP L
Sbjct:   38 GKLAFVILRDREGTIQAVVPKQKVDEETFEIAKK-LGKEDIIAIRGKVVANEKAPKGFEVIPIEIRVLNKADAPLPLDPSEKVPAEIDTRLDKRFLD-IRRPKIQAIFKIRSEMLRSIRKTFADEGFVEVNTPKL 170          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYKC_ENTBH2.716e-1425.77Probable lysyl-tRNA synthetase, cytoplasmic OS=Ent... [more]
SYKC_NOSCE3.547e-1429.02Probable lysyl-tRNA synthetase, cytoplasmic OS=Nos... [more]
SYD_META37.395e-1227.12Aspartyl-tRNA synthetase OS=Methanococcus aeolicus... [more]
SYKM_SCHPO2.152e-1132.85Lysyl-tRNA synthetase, mitochondrial OS=Schizosacc... [more]
SYD_METJA2.810e-1126.40Aspartyl-tRNA synthetase OS=Methanocaldococcus jan... [more]
SYD_METMP4.794e-1133.33Aspartyl-tRNA synthetase OS=Methanococcus maripalu... [more]
SYD_METM78.177e-1134.07Aspartyl-tRNA synthetase OS=Methanococcus maripalu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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