CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STAA3 (Lysyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300) GN=lysS PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.636e-35
Identity = 78/194 (40.21%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSEND-HVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++EL   G++P+  K+DR+  ++ L+E +   +  E    E D HV+           GK  F  ++D +G IQ+Y  K+++  D+FD  K   D+GDI+GV G M +T  GELSV    F +LTKSL PLPDK+HGL D+++RYRQRY+D+++  +    F  R+KI+ E+R  + + GF+EVETP++
Sbjct:   11 VRRQKLQELYDLGIDPFGSKFDRSGLSSDLKEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDDEFDLWKN-ADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYRQRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMM 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STAA1 (Lysyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=lysS PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.636e-35
Identity = 78/194 (40.21%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSEND-HVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++EL   G++P+  K+DR+  ++ L+E +   +  E    E D HV+           GK  F  ++D +G IQ+Y  K+++  D+FD  K   D+GDI+GV G M +T  GELSV    F +LTKSL PLPDK+HGL D+++RYRQRY+D+++  +    F  R+KI+ E+R  + + GF+EVETP++
Sbjct:   11 VRRQKLQELYDLGIDPFGSKFDRSGLSSDLKEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDDEFDLWKN-ADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYRQRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMM 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_FUSNN (Lysyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=lysS PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.636e-35
Identity = 79/200 (39.50%), Postives = 121/200 (60.50%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            ++E + A R KK+EEL S G++P+  K+D+      + +I +H         EN               GK+ F  + D SG IQ+Y +K+ L  +QFD +   +++GDI+G+ G +  T   EL++ V S  +LTK++  LP+KYHGLTDV+ RYR+RYVD++  PEV + F KR KI+  IRK ++  GF+EVETP++
Sbjct:    9 EKEPLIAERWKKIEELESYGIKPFGKKYDKQI---MIGDILKH------KPEENLKFKTAGRIMSLRGKGKVYFAHIEDQSGKIQIYIKKDELGEEQFDHIVKMLNVGDIIGLEGELFITHTEELTLRVKSIALLTKNVRSLPEKYHGLTDVEIRYRKRYVDLIMNPEVRETFIKRTKIIKAIRKYLDDRGFLEVETPIM 199          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STAHJ (Lysyl-tRNA synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=lysS PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.137e-35
Identity = 72/194 (37.11%), Postives = 124/194 (63.92%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSEND-HVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++EL   G++P+  +++R+ +A++L+  +   +  E  + E++ HVS           GK  F  ++D +G IQ+Y  K+++  + FD L    D+GDI+G+ G M +T  GELSV   +F +L+K+L PLPDK+HGL D+++RYRQRY+D+++  +    F  R+KI+ E+R  +   GF+EVETP++
Sbjct:   11 VRRQKLQELIDLGIDPFGKRFERSATASELKSQWDEFSKEELHDKEDESHVSIAGRLMTKRGKGKAGFAHVQDLTGQIQIYVRKDQIGEEDFDNLWKGADLGDIVGIEGVMFKTNTGELSVKAKTFTLLSKALRPLPDKFHGLQDIEQRYRQRYLDLITNQDSTQTFINRSKIIQEMRNYLNKQGFLEVETPMM 204          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_LACSS (Lysyl-tRNA synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=lysS PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.137e-35
Identity = 75/193 (38.86%), Postives = 123/193 (63.73%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K++ L+ +G++P+  +++RTH A  L E +  +   ++ + +N  V+           GK+ F  +RD SG IQ+Y  K+ +  D +   K   D+GD LG++G + +T+ GEL+V       L+K+L PLPDKYHGLT+V++ YRQRY+D+++ PE  D F KR+KI+S +R+ +++  F EVETPVL
Sbjct:   16 VRREKMQFLKDEGIDPFGSRFERTHLAAALHEEFEAIEK-DDLDVKNQEVTIAGRMMSKRGKGKVGFADIRDRSGKIQIYVRKDEVGEDNYKIFKK-ADLGDHLGITGQIMKTDMGELTVKATHLTFLSKALRPLPDKYHGLTNVEQIYRQRYLDLIANPESMDRFTKRSKIISAVREYLDTHDFTEVETPVL 206          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACC7 (Lysyl-tRNA synthetase OS=Bacillus cereus (strain AH187) GN=lysS PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.137e-35
Identity = 72/193 (37.31%), Postives = 122/193 (63.21%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  LR +G++P+  +++RT++ N+L  +Y   +  EE   +   VS           GK  F  ++D  G +Q+Y  K+ +  ++++  K   D+GD++G+ G + +T  GELSV    F +LTKSL PLPDKYHGL DV++RYRQRY+D+++  E  + F  R+KI+ E+R+ ++  G++EVETP++
Sbjct:   15 VRREKLHNLREQGIDPFGKRFERTNATNELLSLYGEFSK-EELEEKEISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYVRKDAVGDEEYELFKT-ADLGDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMM 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACC1 (Lysyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 10987) GN=lysS PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.137e-35
Identity = 72/193 (37.31%), Postives = 122/193 (63.21%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  LR +G++P+  +++RT++ N+L  +Y   +  EE   +   VS           GK  F  ++D  G +Q+Y  K+ +  ++++  K   D+GD++G+ G + +T  GELSV    F +LTKSL PLPDKYHGL DV++RYRQRY+D+++  E  + F  R+KI+ E+R+ ++  G++EVETP++
Sbjct:   15 VRREKLHNLREQGIDPFGKRFERTNATNELLSLYGEFSK-EELEEKEISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYVRKDAVGDEEYELFKT-ADLGDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMM 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_PELTS (Lysyl-tRNA synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=lysS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.645e-35
Identity = 80/200 (40.00%), Postives = 121/200 (60.50%), Query Frame = 1
Query:  205 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            D   +  +R +K+ ELR KG+EPY  +++RTH+A  + + +  +        EN  V            GK  F  ++D +G IQ+Y     +  + ++ L   +DIGDI+GV GS+ +T  GE++V   SF IL+KSL PLP+K+HGL DV+ RYRQRYVD++  PEV +VF  R+KI+   R  ++  GF+EVETP++
Sbjct:   21 DLNELMRVRREKLAELRDKGIEPYGGRFERTHTARYILDNFVEM--------ENRPVVIAGRIMSRRGMGKATFAHIQDGTGQIQIYVRLNDVGPESYE-LFGRLDIGDIIGVQGSVFKTRMGEITVAAESFKILSKSLRPLPEKWHGLRDVELRYRQRYVDLIVNPEVKEVFETRSKIIRACRNFLDGKGFLEVETPMM 211          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACSK (Lysyl-tRNA synthetase OS=Bacillus clausii (strain KSM-K16) GN=lysS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.645e-35
Identity = 77/194 (39.69%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  223 ALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            A+R  K+ +L  +G+ P+  K++RTH++N++ E +      EE   ++DHV            GK  F  ++D  G IQ+Y  ++ +  + +   K  +DIGD++GV G   +T+ GE+SV V   VIL KSL PLPDKYHGL DV++RYRQRY+D+++ PE    F  R+KI+  +R+ ++  GF+EVETP++
Sbjct:   15 AVRRDKLNQLYDEGINPFGGKFERTHTSNEVIEQFAAFTK-EELEEKDDHVVLAGRLMTKRGKGKAGFAHIQDIGGQIQIYVRQDAVGEEAYGLFKS-LDIGDMVGVGGRPFKTKVGEMSVKVTELVILGKSLRPLPDKYHGLKDVEQRYRQRYLDLITSPESRTAFITRSKIIQVMRRYLDEKGFLEVETPMM 206          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACHK (Lysyl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=lysS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.645e-35
Identity = 72/193 (37.31%), Postives = 121/193 (62.69%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  LR +G++P+  +++RT++ N L  +Y   +  EE   +   VS           GK  F  ++D  G +Q+Y  K+ +  ++++  K   D+GD++G+ G + +T  GELSV    F +LTKSL PLPDKYHGL DV++RYRQRY+D+++  E  + F  R+KI+ E+R+ ++  G++EVETP++
Sbjct:   15 VRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSK-EELEEKEISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYVRKDAVGDEEYELFKT-ADLGDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMM 205          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_STAA31.636e-3540.21Lysyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYK_STAA11.636e-3540.21Lysyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYK_FUSNN1.636e-3539.50Lysyl-tRNA synthetase OS=Fusobacterium nucleatum s... [more]
SYK_STAHJ2.137e-3537.11Lysyl-tRNA synthetase OS=Staphylococcus haemolytic... [more]
SYK_LACSS2.137e-3538.86Lysyl-tRNA synthetase OS=Lactobacillus sakei subsp... [more]
SYK_BACC72.137e-3537.31Lysyl-tRNA synthetase OS=Bacillus cereus (strain A... [more]
SYK_BACC12.137e-3537.31Lysyl-tRNA synthetase OS=Bacillus cereus (strain A... [more]
SYK_PELTS3.645e-3540.00Lysyl-tRNA synthetase OS=Pelotomaculum thermopropi... [more]
SYK_BACSK3.645e-3539.69Lysyl-tRNA synthetase OS=Bacillus clausii (strain ... [more]
SYK_BACHK3.645e-3537.31Lysyl-tRNA synthetase OS=Bacillus thuringiensis su... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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