CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STRP2 (Lysyl-tRNA synthetase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=lysS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.263e-34
Identity = 74/193 (38.34%), Postives = 124/193 (64.25%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  LR +G++P+  +++RT ++ +L++ Y +L + E+ + +N+  +           GK+ F  L+D  G IQ+Y  K+ +  + ++  K   D+GD LGV G + RT+ GELS+       L+K+L PLP+K+HGLTDV+  YR+RY+D++S  E  + F  R+KI+SEIR+ ++  GF+EVETPVL
Sbjct:   15 VRREKMAALREQGIDPFGKRFERTANSQELKDKYANL-DKEQLHDKNETATIAGRLVTKRGKGKVGFAHLQDREGQIQIYVRKDAVGEENYEIFKK-ADLGDFLGVEGEVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDVETIYRKRYLDLISNRESFERFVTRSKIISEIRRYLDQKGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ROSCS (Lysyl-tRNA synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=lysS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.263e-34
Identity = 76/192 (39.58%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+ K+E LR+ G++PY  +  RTH+  ++   +  L +  E  +    +            GKLAF  + D+SG IQL+  +  L  + FD+ +  +D  DI+  SG+++RT++GE SV V    +L KSL P P+K+HGL+D+++R+RQRY+D++  PEV DVFR RA IV  +R+ ++  GF+EVETP L
Sbjct:   10 RLAKLERLRAAGIDPYPPRAQRTHTIGEVLAGFDQLMDRGEQVTVAGRI-----VGARRVLGKLAFAHIEDESGRIQLWLSRGDLGDEWFDRFRDDLDTFDIVEASGTLRRTQRGEPSVFVTRMGVLAKSLNPPPEKWHGLSDIEERHRQRYLDLIVNPEVRDVFRTRATIVRTMRRFLDERGFLEVETPTL 196          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_BACWK (Lysyl-tRNA synthetase OS=Bacillus weihenstephanensis (strain KBAB4) GN=lysS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.263e-34
Identity = 72/193 (37.31%), Postives = 120/193 (62.18%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  LR +G++P+  +++RT+S   L  +Y   +  EE   +   VS           GK  F  ++D  G +Q+Y  K+ +  ++++ L    D+GD++G+ G + +T  GELSV    F +LTKSL PLPDKYHGL DV++RYRQRY+D+++  E  + F  R+KI+ E+R+ ++  G++EVETP++
Sbjct:   15 VRREKLHNLREQGIDPFGKRFERTNSTTDLVSLYGEFSK-EELEEKEITVSIAGRIMTKRGKGKAGFAHIQDLQGQVQIYVRKDTVGDEEYE-LFTTADLGDLVGIEGKVFKTNVGELSVKAIGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMM 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_WOLSU (Lysyl-tRNA synthetase OS=Wolinella succinogenes GN=lysS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.874e-34
Identity = 80/194 (41.24%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLAN--GEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            RI+K EELR  G  PY  +  RT +  Q  + +  L +   EE   E+   S           GK AF  + D+SG +Q+Y  +  L  D F  LK   ++GDI+ VSG    T+ GELS+      ILTK+++PLP+KYHGL DV+ RYRQRY+D++  PEV + F+ R+++VS +R+  E  GF+EVETP++
Sbjct:   11 RIQKGEELRELGRNPYDNQLMRTLTHAQFLQKFEALKSLESEEKRDESAKESIAGRIKFLRHMGKAAFAKIEDESGILQIYFSQNELGED-FKMLKKLAEVGDIVAVSGFPFVTKTGELSLHALEMKILTKAIVPLPEKYHGLVDVELRYRQRYLDLIMNPEVKETFKLRSQVVSSVRRFFEERGFLEVETPMM 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ROSS1 (Lysyl-tRNA synthetase OS=Roseiflexus sp. (strain RS-1) GN=lysS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.874e-34
Identity = 75/192 (39.06%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+ K+E LR+ G++PY  +  RTH+   +   +  L    E  +    +            GKLAF  + D+SG IQ++  +  +  + FD+ +  +D  DI+  +G+++RT++GE SV V    +L KSL P P+K+HGL+D+++R+RQRY+D++  PEV DVFR RAKIVS +R+ ++  GF+EVETP L
Sbjct:   10 RLAKLERLRAAGIDPYPPRTRRTHTIGFVLASFDQLMERGEQVTVAGRI-----VGARRILGKLAFAHIEDESGRIQIWLSRGDIGDEWFDRFRDDLDTFDIVEATGTLRRTQRGEPSVFVERLGVLAKSLNPPPEKWHGLSDIEERHRQRYLDLIVNPEVRDVFRTRAKIVSTMRRFLDERGFLEVETPTL 196          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_THETH (Lysyl-tRNA synthetase OS=Thermus thermophilus GN=lysS PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.978e-34
Identity = 81/192 (42.19%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+  +E L   G  PY Y++ +THSA  + +  R      ES    + V+           GK+ F  L D++G IQLY +++  L+ +++ LK  +D+GDILGV G    T+ GE++V V  +  L KSL PLPDK+HGL D + RYRQRY+D++  PEV +VFR+R++IV  IR+  E+ GF+EVETP+L
Sbjct:    8 RLLNLEALVEAGFAPYPYRFPKTHSAEAILKAKRGAP--PESEWPEEEVAVAGRLVALRRMGKVTFAHLLDETGRIQLYFQRD--LTPKYELLKK-LDVGDILGVRGHPFTTKTGEVTVKVLDWTPLVKSLHPLPDKWHGLRDKEVRYRQRYLDLIVNPEVREVFRRRSEIVRYIRRFFEAKGFLEVETPIL 194          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_THET8 (Lysyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lysS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.978e-34
Identity = 81/192 (42.19%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+  +E L   G  PY Y++ +THSA  + +  R      ES    + V+           GK+ F  L D++G IQLY +++  L+ +++ LK  +D+GDILGV G    T+ GE++V V  +  L KSL PLPDK+HGL D + RYRQRY+D++  PEV +VFR+R++IV  IR+  E+ GF+EVETP+L
Sbjct:    8 RLLNLEALVEAGFAPYPYRFPKTHSAEAILKAKRGAP--PESEWPEEEVAVAGRLVALRRMGKVTFAHLLDETGRIQLYFQRD--LTPKYELLKK-LDVGDILGVRGHPFTTKTGEVTVKVLDWTPLVKSLHPLPDKWHGLRDKEVRYRQRYLDLIVNPEVREVFRRRSEIVRYIRRFFEAKGFLEVETPIL 194          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_THET2 (Lysyl-tRNA synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lysS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.978e-34
Identity = 81/192 (42.19%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            R+  +E L   G  PY Y++ +THSA  + +  R      ES    + V+           GK+ F  L D++G IQLY +++  L+ +++ LK  +D+GDILGV G    T+ GE++V V  +  L KSL PLPDK+HGL D + RYRQRY+D++  PEV +VFR+R++IV  IR+  E+ GF+EVETP+L
Sbjct:    8 RLLNLEALVEAGFAPYPYRFPKTHSAEAILKAKRGAP--PESEWPEEEVAVAGRLVALRRMGKVTFAHLLDETGRIQLYFQRD--LTPKYELLKK-LDVGDILGVRGHPFTTKTGEVTVKVLDWTPLVKSLHPLPDKWHGLRDKEVRYRQRYLDLIVNPEVREVFRRRSEIVRYIRRFFEAKGFLEVETPIL 194          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_MOOTA (Lysyl-tRNA synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=lysS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.978e-34
Identity = 77/194 (39.69%), Postives = 116/194 (59.79%), Query Frame = 1
Query:  223 ALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            A+R++K+ +L+  G+EPY   ++ THS   ++E +  L        E   V+           GK +F  L+D  G +QLY   + +    ++  +  +DIGDI+GV G + RT +GE+SV V    +L KSL PLP+K+HGL DVD RYRQRY+D++  PEV  VF  RA+I+  IR  +++ GF+EVETP +
Sbjct:   11 AVRLEKLHQLQEAGIEPYGGPFEVTHSTTAIRERFDEL--------EGQEVALAGRLLAIRSHGKASFADLQDREGRLQLYIRLDNVGPGIYELFQK-LDIGDIVGVRGKVFRTHRGEISVEVRQLTLLCKSLRPLPEKWHGLKDVDLRYRQRYLDLIVNPEVKQVFITRARIIRAIRSFLDNRGFLEVETPTM 195          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_LACLS (Lysyl-tRNA synthetase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=lysS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 75/198 (37.88%), Postives = 116/198 (58.59%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXF-----GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  L   G++P+ +K+ RTH++ +L E Y      +E   E  H                  GK+ F  L+D  G IQLY  K+ +  + ++  K   D+GD LGV G + +T+ GELS+       L+K+L PLP+K+HGLTD + RYR+RY+D++S  E  + F  R+KI+SEIR+ ++  G++EVETPVL
Sbjct:   13 VRREKMGNLHDAGIDPFGHKFTRTHNSQELHEAY------DEKTKEELHELALSGIVAGRLMTKRGKGKVGFAHLQDREGQIQLYVRKDEVGEENYEIFKK-ADLGDFLGVEGEIMKTDMGELSIKAKKLTFLSKALRPLPEKFHGLTDTETRYRKRYLDLISNKESFNRFVTRSKIISEIRRYMDGRGYLEVETPVL 203          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_STRP25.263e-3438.34Lysyl-tRNA synthetase OS=Streptococcus pneumoniae ... [more]
SYK_ROSCS5.263e-3439.58Lysyl-tRNA synthetase OS=Roseiflexus castenholzii ... [more]
SYK_BACWK5.263e-3437.31Lysyl-tRNA synthetase OS=Bacillus weihenstephanens... [more]
SYK_WOLSU6.874e-3441.24Lysyl-tRNA synthetase OS=Wolinella succinogenes GN... [more]
SYK_ROSS16.874e-3439.06Lysyl-tRNA synthetase OS=Roseiflexus sp. (strain R... [more]
SYK_THETH8.978e-3442.19Lysyl-tRNA synthetase OS=Thermus thermophilus GN=l... [more]
SYK_THET88.978e-3442.19Lysyl-tRNA synthetase OS=Thermus thermophilus (str... [more]
SYK_THET28.978e-3442.19Lysyl-tRNA synthetase OS=Thermus thermophilus (str... [more]
SYK_MOOTA8.978e-3439.69Lysyl-tRNA synthetase OS=Moorella thermoacetica (s... [more]
SYK_LACLS3.411e-3337.88Lysyl-tRNA synthetase OS=Lactococcus lactis subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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