CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_HELPS (Lysyl-tRNA synthetase OS=Helicobacter pylori (strain Shi470) GN=lysS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.411e-33
Identity = 76/192 (39.58%), Postives = 113/192 (58.85%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            RI K   LR +G  PY     R+ +     E Y ++   EE   +    S           GK  F+ + D+S  +Q Y  +  L +D+F  LK  +++GDI+ V G    T+ GELSV    F IL+K+++PLP+K+HGL+D++ RYRQRY+D++  P V DVF+KR+ IVS +RK  E+ GF+EVETP++
Sbjct:   10 RIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKIEDESAILQAYVSQNEL-NDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVNPSVKDVFKKRSLIVSSVRKFFETEGFLEVETPMM 200          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STRSV (Lysyl-tRNA synthetase OS=Streptococcus sanguinis (strain SK36) GN=lysS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.819e-33
Identity = 74/193 (38.34%), Postives = 119/193 (61.66%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  L  +G++P+  +++RT ++ QL+E Y    + EE N  N+              GK+ F  ++D  G IQ+Y  K+ +  + ++  K   D+GD LG+ G + RT+ GELS+       L+K+L PLP+K+HGLTDV+  YR+RY+D++S  E  + F  R+KI+SEIR+ ++  GF+EVETPVL
Sbjct:   15 IRREKMAALAEQGIDPFGKRFERTANSAQLKEKYND-KDKEELNELNETAIIAGRLMTKRGKGKVGFAHIQDREGQIQIYVRKDAVGEENYEIFKK-ADLGDFLGIEGEIMRTDMGELSIKATHLTHLSKALRPLPEKFHGLTDVETIYRKRYLDLISNRESFERFVTRSKIISEIRRYLDGQGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STRPG (Lysyl-tRNA synthetase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=lysS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.819e-33
Identity = 75/193 (38.86%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  L  +G++P+  ++DRT ++ +L+E Y      EE +  N+              GK+ F  L+D  G IQLY  K+ +  D ++  K   D+GD +GV G + RT+ GELS+       L+KSL PLP+K+HGLTD++  YR+R++D++S  E  D F  R+K++SEIR+ ++ L F+EVETPVL
Sbjct:   15 VRREKMMALAEQGIDPFGKRFDRTANSAELKEKYADKTK-EELHELNETAIVAGRLMTKRGKGKVGFAHLQDREGQIQLYVRKDSVSEDNYEIFKK-ADLGDFIGVEGEVMRTDMGELSIKATKLTHLSKSLRPLPEKFHGLTDIETIYRKRHLDLISNRESFDRFVTRSKMISEIRRYLDGLDFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STRP8 (Lysyl-tRNA synthetase OS=Streptococcus pyogenes serotype M18 GN=lysS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.819e-33
Identity = 75/193 (38.86%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  L  +G++P+  ++DRT ++ +L+E Y      EE +  N+              GK+ F  L+D  G IQLY  K+ +  D ++  K   D+GD +GV G + RT+ GELS+       L+KSL PLP+K+HGLTD++  YR+R++D++S  E  D F  R+K++SEIR+ ++ L F+EVETPVL
Sbjct:   15 VRREKMMALAEQGIDPFGKRFDRTANSAELKEKYADKTK-EELHELNETAIVAGRLMTKRGKGKVGFAHLQDREGQIQLYVRKDSVSEDNYEIFKK-ADLGDFIGVEGEVMRTDMGELSIKATKLTHLSKSLRPLPEKFHGLTDIETIYRKRHLDLISNRESFDRFVTRSKMISEIRRYLDGLDFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STRP6 (Lysyl-tRNA synthetase OS=Streptococcus pyogenes serotype M6 GN=lysS PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.819e-33
Identity = 75/193 (38.86%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  L  +G++P+  ++DRT ++ +L+E Y      EE +  N+              GK+ F  L+D  G IQLY  K+ +  D ++  K   D+GD +GV G + RT+ GELS+       L+KSL PLP+K+HGLTD++  YR+R++D++S  E  D F  R+K++SEIR+ ++ L F+EVETPVL
Sbjct:   15 VRREKMMALAEQGIDPFGKRFDRTANSAELKEKYADKTK-EELHELNETAIVAGRLMTKRGKGKVGFAHLQDREGQIQLYVRKDSVSEDNYEIFKK-ADLGDFIGVEGEVMRTDMGELSIKATKLTHLSKSLRPLPEKFHGLTDIETIYRKRHLDLISNRESFDRFVTRSKMISEIRRYLDGLDFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_HELP2 (Lysyl-tRNA synthetase OS=Helicobacter pylori (strain P12) GN=lysS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.819e-33
Identity = 76/192 (39.58%), Postives = 113/192 (58.85%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            RI K   LR +G  PY     R+ +     E Y ++ + EE   +    S           GK  F+ + D+S  +Q Y  +  L +D+F  LK  +++GDI+ V G    T+ GELSV    F IL+K+++PLP+K+HGL+D++ RYRQRY+D++  P V DVF+KR+ IVS +RK  E  GF+EVETP++
Sbjct:   10 RIHKANSLREEGKNPYQNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKCESIVGRVKLLRLMGKACFIKVEDESAILQAYVSQNEL-NDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMM 200          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_HELHP (Lysyl-tRNA synthetase OS=Helicobacter hepaticus GN=lysS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.819e-33
Identity = 80/197 (40.61%), Postives = 119/197 (60.41%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHL----ANGEESNSENDHV-SXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            RIKK+E +R +G  PYA K  RT S       Y HL    ++  +  ++N  + S           GK  F+ ++D+SG +Q Y  K  +  D F  +K  +++GDI+ VSG    T+ GELS+   +  ILTKS++PLP+K+HGL D++ RYRQRYVD++   +V + F+ R++IVS IR+  E  GF+EVETP+L
Sbjct:   10 RIKKMELMRQEGFNPYANKTTRTISNYNFLNKYNHLKMQSSDDTQDCTQNKEIESIVGRVRFIRLMGKACFIKIQDESGILQAYVSKNDIGED-FLLIKKVLEVGDIINVSGYAFVTKTGELSIHTLTLQILTKSIVPLPEKFHGLNDIELRYRQRYVDLIVNNKVKETFKLRSQIVSCIRQFFEQKGFLEVETPML 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STRTD (Lysyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=lysS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.600e-33
Identity = 73/193 (37.82%), Postives = 120/193 (62.18%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  L  +G++P+  +++RT ++ QL+E Y      EE +  N+  +           GK+ F  ++D  G IQ+Y  K+ +  + ++  K   D+GD LGV G + RT+ GELS+       L+K+L PLP+K+HGL+D++  YR+RY+D++S  E  D F  R+KI+SEIR+ +++ GF+EVETPVL
Sbjct:   15 VRREKMAALAEQGIDPFGKRFERTATSGQLKEKYADKTK-EELHEINETATIAGRLMTKRGKGKVGFAHIQDRDGQIQIYVRKDAVGEENYEIFKK-ADLGDFLGVEGEVMRTDMGELSIKATHITHLSKALRPLPEKFHGLSDIETIYRKRYLDLISNRESFDRFVTRSKIISEIRRYLDAQGFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_STRP1 (Lysyl-tRNA synthetase OS=Streptococcus pyogenes serotype M1 GN=lysS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.600e-33
Identity = 75/193 (38.86%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  226 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R +K+  L  +G++P+  ++DRT ++ +L+E Y      EE +  N+              GK+ F  L+D  G IQLY  K+ +  D ++  K   D+GD +GV G + RT+ GELS+       L+KSL PLP+K+HGLTD++  YR+R++D++S  E  D F  R+K++SEIR+ ++ L F+EVETPVL
Sbjct:   15 VRREKMTALAEQGIDPFGKRFDRTANSAELKEKYADKTK-EELHELNETAIVAGRLMTKRGKGKVGFAHLQDREGQIQLYVRKDSVGEDNYEIFKK-ADLGDFIGVEGEVMRTDMGELSIKATKLTHLSKSLRPLPEKFHGLTDIETIYRKRHLDLISNRESFDRFVTRSKMISEIRRYLDGLDFLEVETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_HELPG (Lysyl-tRNA synthetase OS=Helicobacter pylori (strain G27) GN=lysS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.600e-33
Identity = 76/192 (39.58%), Postives = 113/192 (58.85%), Query Frame = 1
Query:  229 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            RI K   LR +G  PY     R+ +     E Y ++ + EE   +    S           GK  F+ + D+S  +Q Y  +  L +D+F  LK  +++GDI+ V G    T+ GELSV    F IL+K+++PLP+K+HGL+D++ RYRQRY+D++  P V DVF+KR+ IVS +RK  E  GF+EVETP++
Sbjct:   10 RIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKCESIVGRVKLLRLMGKACFIKIEDESAILQAYVSQNEL-NDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVNPGVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMM 200          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_HELPS3.411e-3339.58Lysyl-tRNA synthetase OS=Helicobacter pylori (stra... [more]
SYK_STRSV5.819e-3338.34Lysyl-tRNA synthetase OS=Streptococcus sanguinis (... [more]
SYK_STRPG5.819e-3338.86Lysyl-tRNA synthetase OS=Streptococcus pyogenes se... [more]
SYK_STRP85.819e-3338.86Lysyl-tRNA synthetase OS=Streptococcus pyogenes se... [more]
SYK_STRP65.819e-3338.86Lysyl-tRNA synthetase OS=Streptococcus pyogenes se... [more]
SYK_HELP25.819e-3339.58Lysyl-tRNA synthetase OS=Helicobacter pylori (stra... [more]
SYK_HELHP5.819e-3340.61Lysyl-tRNA synthetase OS=Helicobacter hepaticus GN... [more]
SYK_STRTD7.600e-3337.82Lysyl-tRNA synthetase OS=Streptococcus thermophilu... [more]
SYK_STRP17.600e-3338.86Lysyl-tRNA synthetase OS=Streptococcus pyogenes se... [more]
SYK_HELPG7.600e-3339.58Lysyl-tRNA synthetase OS=Helicobacter pylori (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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