CK933152

Overview
NameCK933152
Unique NameCK933152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933152 vs. ExPASy Swiss-Prot
Match: TUB1_CAEEL (Tubby protein homolog 1 OS=Caenorhabditis elegans GN=tub-1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:  124 ILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLAC 423
            IL NK+P+W+++ Q + LNF GRVT ASVKNFQ+I                       + I++QFG++  D FTMD+RYPLSA QAF I ++SF  KLAC
Sbjct:  344 ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSP------------------EYIVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLAC 425
[Close]
BLAST of CK933152 vs. ExPASy Swiss-Prot
Match: TULP2_HUMAN (Tubby-related protein 2 OS=Homo sapiens GN=TULP2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:  121 LILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 408
            L+L NK P W ++   + LNF GRVT ASVKNFQ++                       + ++LQFG+VG D FTMD+ +P S  QAF+ICLSSF+
Sbjct:  443 LLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKH------------------QEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
The following BLAST results are available for this feature:
BLAST of CK933152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TUB1_CAEEL1.209e-1847.00Tubby protein homolog 1 OS=Caenorhabditis elegans ... [more]
TULP2_HUMAN1.633e-1543.75Tubby-related protein 2 OS=Homo sapiens GN=TULP2 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_H06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933152 ID=CK933152; Name=CK933152; organism=Citrus sinensis; type=EST; length=452bp
GGGGAAGACTCGTTGCGGAGCTTCTCAAAATCAATTGACGTTTCAACCGA
ATTTAGCAGCTCACGGTTCTCCGATATTGTTGGACCCCGTGATGAAGAAG
ATGAGGGAAAGGATAGACCCCTGATTCTTCGGAATAAGGCACCAAGATGG
CATGAACAACTGCAGTGTTGGTGCCTCAACTTCCGTGGGAGGGTGACTGT
TGCATCAGTCAAGAATTTCCAGCTGATTGCTGCAACTCAGCCTGCAGCTG
GTGCGCCCACACCATCGCAGCCACCCCCGCCGCCCCCGTCAGATCACGAT
AAGATTATTCTGCAATTTGGCAAAGTTGGTAAGGATATGTTCACAATGGA
TTACCGGTATCCTCTGTCTGCATTTCAGGCTTTTGCGATCTGCTTGAGTA
GTTTCGACACCAAATTGGCATGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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