CK933157

Overview
NameCK933157
Unique NameCK933157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.269e-20
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTVVMQS +   I+P+GW+EW G+FAL TL+Y E+ N G GA TS RVKW  + VIT   EA  +T A  I G +WL ST   +  GL
Sbjct:  454 SRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGSWLNSTSVAYVEGL 542          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.269e-20
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTVVM+S +  +I+P+GW EW G+FAL TL+Y E+ N G GA TS RVKW  + VIT  AEA ++T A  I G +WL ST   +  GL
Sbjct:  460 SRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGL 548          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTV +++++SDV+ P GW EW+ +FALDTLFY E+ N G G+  S+RVKW  + V  ++ +A  +T + FI G+ WL STG  FS GL
Sbjct:  435 SRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGL 523          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.165e-20
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTV MQS I +V+ P GW EW+G+FAL TL+YAEY NTG+G+ T++RV W  + VI S  +A  +T  NF+ G  W+  +G P+  GL
Sbjct:  484 SRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINS-TDANNFTVENFLLGDGWMVQSGVPYISGL 571          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.823e-20
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTV MQS ISD++ P GW EW+G   LDT++Y EY N G GA+T+ RV+W  + ++ + AEA  +T  NF  G TWL  T  PF  GL
Sbjct:  528 SRTVFMQSYISDIVQPVGWLEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLL-NLAEAMNFTVYNFTMGDTWLPQTDIPFYGGL 615          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-19
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTV +QS ISDV+ P GW EW+G   LDT+ Y EY N G GADTS RV+WS + ++ +  +A  +T  NF  G TWL  T  PF  GL
Sbjct:  533 SRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL-NLVQAMNFTVYNFTLGDTWLPQTDIPFYGGL 620          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.403e-19
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTV + S +  +I+PAGW EWSG+FAL TL+Y EY+NTG G++T+ RV W  + V T+  E   +T  NFI GS WL S   P  L L
Sbjct:  232 SRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIPVYLNL 320          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.394e-19
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTV M S I   ++  GW EW+  FALDTL+Y EY N+G G+    RV W  ++VI S AEA  +T A FI GS+WL STG  F  GL
Sbjct:  508 SRTVYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEANRFTVAEFIYGSSWLPSTGVSFLAGL 596          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.394e-19
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTVVMQS I   I+P+GW  WSG F L +LFY EY N+G G+  S RVKWS      +  EA+ +T A+FI G+ WL STG  F  GL
Sbjct:  428 SRTVVMQSFIGGSIHPSGWSPWSGGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGNIWLPSTGVSFDPGL 516          
BLAST of CK933157 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 3
Query:    3 ARTVVMQSDISDVINPAGWYEW--SGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 269
            +RTVV+Q+ + +V++P GW  W     F LDTLFYAEY+NTG  + T  RV W  F V+  A++A  +T   FIAG+ WL  TG PF+ GL
Sbjct:  446 SRTVVLQTYLDNVVSPVGWSPWIEGSVFGLDTLFYAEYKNTGPASSTRWRVSWKGFHVLGRASDASAFTVGKFIAGTAWLPRTGIPFTSGL 536          
The following BLAST results are available for this feature:
BLAST of CK933157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PME3_SOLLC1.269e-2051.69Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME21_SOLLC1.269e-2051.69Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME44_ARATH1.658e-2048.31Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME41_ARATH2.165e-2049.44Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME25_ARATH4.823e-2049.44Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME47_ARATH1.075e-1950.56Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME_ACTDE1.403e-1949.44Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME34_ARATH2.394e-1950.56Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME16_ARATH2.394e-1951.69Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME59_ARATH3.126e-1948.35Probable pectinesterase/pectinesterase inhibitor 5... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004289_H11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933157 ID=CK933157; Name=CK933157; organism=Citrus sinensis; type=EST; length=559bp
GGGCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAACCCA
GCTGGGTGGTATGAATGGAGTGGGAATTTTGCATTGGACACATTGTTTTA
TGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAGGGTGA
AATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAACTTAT
ACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACTGGGTT
TCCTTTCTCTCTTGGTCTGTGAATTTGTCATACATAGGCCATAGCTAAGC
TCAGCTGCCTATAAATGTCCTAGCTAGCAATAAATAACACTTGCTCCGCT
AGATGTTTGATGATTTTATTTGTGCGAGTCTGCTCAAGTTTGATGATTTT
ATTTGTGTGAGTCTGCTCGAGTTTGATGTAAGAGATTTATCTCAGCAGGG
AATTATGGATGATGATTGCATGCGTTGCTCCCTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGAAAAAAAAAAAAAAAAA
AAAAAAAAA
back to top